Esim013062.3
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383928.1:13202664-13203140[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-07 0.00031 21.2 0.0 5 41 18 53 17 57 0.79 2 2 4.9 2.1e+03 -0.6 0.0 12 22 132 143 130 144 0.72
Sequence Information
- Coding Sequence
- ATGCCACGGAATAGAAGCCAAGGATTGAAGGTGAAATGGAGCCAAATTGATTTAATCAGGGCATTCCAACTCGTCGATGAAGGGACACCGGTAAGAGAAGCAGCACGTTTAACTGAGATTCCCTTTTCAACCCTCCAAGAaagactgaaaaagagaaactctgactccccgtctctgggaaggaatccagtattcacaaaagaacaggaaacggaaatggcagatcaagtaaaatatctcggtaaaatattttatggctgtacttcgattcaaatcagaaagatggcttatgaatatgctgttaaaaataatttgaaacacaactttaatgaagaacagagaatggctggcaaagattggcttatgggttttatgaaaagaaacaatttatctgtccgtgaagcagaaggtacaagtttaaacagagcaaccgcttttaataagtcaatatatttttcacgctgcttggggagttga
- Protein Sequence
- MPRNRSQGLKVKWSQIDLIRAFQLVDEGTPVREAARLTEIPFSTLQERLKKRNSDSPSLGRNPVFTKEQETEMADQVKYLGKIFYGCTSIQIRKMAYEYAVKNNLKHNFNEEQRMAGKDWLMGFMKRNNLSVREAEGTSLNRATAFNKSIYFSRCLGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636296;
- 90% Identity
- iTF_00640254;
- 80% Identity
- -