Esim031528.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383941.1:6657668-6658162[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-07 0.00033 21.1 0.0 5 41 18 53 17 57 0.79 2 2 4.5 1.9e+03 -0.5 0.0 12 22 132 143 130 144 0.64
Sequence Information
- Coding Sequence
- ATGCCGCGGAATAGAAGCCAAGGATTGAAGGTGAAATGGAGCCAAATTGATTTAATCAGGGCATTCCAACTCGTCGATGAAGGGACACCGGTAAGAGAAGCAGCACGTTTAACTGAGATTCCCTTTTCAACCCTCCAAGAAAGACTGAAAAAGAGAAACTCTGACTCCCCGTCTCTGGGAAGGAATCCAGTATTCACAAAAGAACAGGAAACGGAAATGGCAGATCAAGTAAAATATCTCGGTAAAATATTTTATGGCTGTACTTCGATTCAAATCAGAAAGATGGCTTATGAATATGCTGTTAAAAATAATTTGAAACACAACTTTAATGAAGAACAGAGAATGGCTGGCAAAGATTGGCTTATGGGTTTTATGAAAAGAAACAATTTATCTGTCCGTAAAGCAGAAGGTACAAGTTTAAACAGAGCAACCGCTTTTAATAAAGATGAAGTCAATATATTTTTCACGCTGCTTGGGGAGTTGATGGAAAAATAA
- Protein Sequence
- MPRNRSQGLKVKWSQIDLIRAFQLVDEGTPVREAARLTEIPFSTLQERLKKRNSDSPSLGRNPVFTKEQETEMADQVKYLGKIFYGCTSIQIRKMAYEYAVKNNLKHNFNEEQRMAGKDWLMGFMKRNNLSVRKAEGTSLNRATAFNKDEVNIFFTLLGELMEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636296;
- 90% Identity
- iTF_00640258;
- 80% Identity
- -