Eagr016202.1
Basic Information
- Insect
- Eledona agricola
- Gene Symbol
- -
- Assembly
- GCA_964023215.1
- Location
- OZ026860.1:8267141-8268331[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.01 78 3.8 1.4 27 47 191 210 185 216 0.69 2 4 0.0031 24 5.5 0.0 23 48 213 238 209 242 0.88 3 4 0.0034 26 5.4 0.1 25 49 274 298 265 304 0.88 4 4 6.7e-07 0.0051 17.2 0.3 21 48 327 354 313 360 0.88
Sequence Information
- Coding Sequence
- ATGAGTGACGCGGTATTGTATCAGTGCCGTTTGTGTTTGAAAAACTCTCAGTTctgttattcaattttcgacGAGGACGTTACTGAAATAATCGAAAGCTTCACCTCAATTAAGATCGAGGAGGACGACAACCTGCCGGAAATATGCTGCTCGCAGTGCTTGGAAGACATCTACGTAGTGTATAAAATCCGCTCTCGTATTATAGAATCGGACCGAATCCTGCGCGAGCGCCTTGCAGAGACCCAGCAGAGCTCGTCCTCGGAAGCAAGCCCTGTAAAGATGGAAAATGAAGCAAAAGCTGAAATGGACCCGGACACCGTGCCCGAGTTTGTAATGATCAAAGACGAGAACGAGTCAAACTTAATGCCGGAAGACTCGGTTGTGGAAGAAATCGAAATCACGATTAACCCCGAACTGAACGAGGTGTTCAGGAAGCAGATTGAATACAAGCGCAAGGCTGCTCTCCCCGCACAAGATGCTTCGTACTACGAGTGCTCGGACTGCAACATGCGGTTCAGTTTTCAAAAATACTATTTGCAACACATGAAGAAGCACGACATAGTCAGGGTGTGCAAGATCTGCACGCGTCAAGTTCTCACGTGCAACTATCGGCGGCACTTGGAGGTGCACAAGTCGTCCCCGAAGGTGTGCGAACTGTGTGGGGCCATCGCCAAAAATGCGGAAAGCTTGCGCGGGCACATGTTTTATATGCATAAAAGCACGGCCGAGCAGTACAAGTGCAAACATTGCGGCAAGTTTTTCCGATACAAGTACAAATATCAATTGCACTTGCGTAAGGCGCATGGTGGTGACAAGACCCACATCTGCGAGATTTGTGGAAAGGCGTTTTACACTACCAGAGACGTAAACAGGCACATACAGATGACTCACATGAAGCTCAGACCATTCATTTGCCAGTACTGTAATAAGGGGTTTAGTAGTTCTTATGCTAGAAGGACACATCTAAGGCAACACACCAATGAAAAGCCGTACACGTGTGATATTTGCAATGAAGGATTCAGGCAGAGGGTATCGCTGAGGACGCATTTGAAGTCCAAACATGGAATTACGAAACCTGTCGAGGATAGCGTTCCATGTGCACAAACTGTCCAGGCCCAAGCTACAGTCTAA
- Protein Sequence
- MSDAVLYQCRLCLKNSQFCYSIFDEDVTEIIESFTSIKIEEDDNLPEICCSQCLEDIYVVYKIRSRIIESDRILRERLAETQQSSSSEASPVKMENEAKAEMDPDTVPEFVMIKDENESNLMPEDSVVEEIEITINPELNEVFRKQIEYKRKAALPAQDASYYECSDCNMRFSFQKYYLQHMKKHDIVRVCKICTRQVLTCNYRRHLEVHKSSPKVCELCGAIAKNAESLRGHMFYMHKSTAEQYKCKHCGKFFRYKYKYQLHLRKAHGGDKTHICEICGKAFYTTRDVNRHIQMTHMKLRPFICQYCNKGFSSSYARRTHLRQHTNEKPYTCDICNEGFRQRVSLRTHLKSKHGITKPVEDSVPCAQTVQAQATV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01410293;
- 90% Identity
- iTF_00639823;
- 80% Identity
- iTF_00639823;