Eagr003118.1
Basic Information
- Insect
- Eledona agricola
- Gene Symbol
- -
- Assembly
- GCA_964023215.1
- Location
- OZ026854.1:2128760-2131664[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.007 53 4.4 0.2 20 47 271 298 263 305 0.81 2 8 0.16 1.2e+03 0.0 0.1 22 46 301 325 294 333 0.71 3 8 0.0014 11 6.6 0.0 23 44 330 351 320 355 0.90 4 8 0.012 89 3.7 0.0 21 48 356 382 352 385 0.87 5 8 0.11 8e+02 0.6 0.1 23 47 414 438 406 444 0.80 6 8 0.07 5.3e+02 1.2 0.1 21 43 440 462 431 467 0.80 7 8 0.00098 7.4 7.1 0.0 21 49 468 496 459 499 0.85 8 8 0.00076 5.7 7.5 0.0 21 44 496 519 492 525 0.90
Sequence Information
- Coding Sequence
- ATGACCGAAGAATTAATACCCAATGTATGTCGAGCATGTTTGACCGAATCGGGAGAGTTCCACTCGATATTCACACCGGACGAAAGCACCGGACATTCTGTACACATTTCGGAAATGATAATGGCATTCGCTTCCGTTCAGGTAACTTTTGGAGACGGCTTGTCGGAACAGATCTGCTCCACATGTGCCAAAGACACAATCAGGCTTTATTTGTTCAAATTAAAATGCGAAGAATCAGATCGAGTGTTGAGGAATCGTTTGGCGAAAAGGCTCGTTCAGGACCTGCCCCTAAACAAAGAAAAACCTGCTGCCGACGACCAAAAGTACGATGAATTATTGTATGAAGTTGTAATCAAACCCGAATTGAATGTAGAAGACCCTCAATCGAAGCAGGATCAAAGTCATAAACAGAACGAGCAAGACAAATGTGAAAGCCATATAGAAACTATACAGCCTGTTTTCCACGATGTATCGGTTAAAGAATTCATATGCACCTATTGCGCAAAGAGTTTTAATCAACATATTGCTTTCAACCAACACATGAAGAAACATGTACCGGTAGCGAAAGCATTCCAATGTGACACTTGTAATAAGAGGTTTTCACGAAACGACTTGCTACTCAGACATAAAATAGCACATGCAATGAAGATtggtacaaaaaaatttgacttTGAGGAATTCGATCAAGAAGATGATCAGGAAGAGGAGGACACTATTATAATTAAAACAGAGTCAAGTCTGTATCCGTGCACTGAGTGCAATATATTGTTCTTGAAAAAGGAAGAACAGGAGAACCACATGCAAACTCATCAAAGTATAGAGAGACGAGtttgtaatatttgttttaaaactttcaGTAAGGAAGCACATTTAAACAGACACATGAAAACCCATTCTGGGAATAGGCCTCATGTGTGTCCCACCTGTAAGAAAGGATTTCTTAGACCCGAACAGCTCACTAATCACATGAATACTCATTCGGGACTCAAGCCGCATGTTTGTGCCATCTGTTTTAAAGGTTTTAATCAAATCTCAAATTTAAAGGACCACATGCGCACCCACAACGGCGAGAAACCGTTCCTGTGCTCGACCTGCGGCAAGGGTTTCAACCAGCTTGGTAATTTACGACAGCACACGATCAGACACAGTGGCATCAAAGCACATTTATGCAGCACTTGCGGAAACGGCTTCGCAAGCAAAGGTGAGCTTTCTGCTCATCTTCGCAAACATACCGGAGCTCGACCATTCGTGTGTTCCATTTGCAACCATGGGTTCACGACTTCGAGTTCATTGACCAAACACAAGAGAATACACTCTGGAGAGAAACCGTACGAATGCGACGTTTGTAAAATGCGTTTTTCAAGATCGGGCATATTGGCGAGACATAAAAGAACGCACACCGGCGAAAAACCGTACGTGTGCAAGTTTTGTACGAAGGCGTTCTCGCAATCGAACGACTTGACGTCGCATTTAAGGATACACACCGGCGAAAAACCATTTATTTGTGATGTGTGTGGACAGGCATTCAGGCAAagttcggctttgaagacgcaCAAGAAGGCTCACGCTAATAAGAATCTCATTGAAGCTAGGAGTGTTTTAGGAGTTATGCACCAACCTTTTTTGGGGGGACTttaa
- Protein Sequence
- MTEELIPNVCRACLTESGEFHSIFTPDESTGHSVHISEMIMAFASVQVTFGDGLSEQICSTCAKDTIRLYLFKLKCEESDRVLRNRLAKRLVQDLPLNKEKPAADDQKYDELLYEVVIKPELNVEDPQSKQDQSHKQNEQDKCESHIETIQPVFHDVSVKEFICTYCAKSFNQHIAFNQHMKKHVPVAKAFQCDTCNKRFSRNDLLLRHKIAHAMKIGTKKFDFEEFDQEDDQEEEDTIIIKTESSLYPCTECNILFLKKEEQENHMQTHQSIERRVCNICFKTFSKEAHLNRHMKTHSGNRPHVCPTCKKGFLRPEQLTNHMNTHSGLKPHVCAICFKGFNQISNLKDHMRTHNGEKPFLCSTCGKGFNQLGNLRQHTIRHSGIKAHLCSTCGNGFASKGELSAHLRKHTGARPFVCSICNHGFTTSSSLTKHKRIHSGEKPYECDVCKMRFSRSGILARHKRTHTGEKPYVCKFCTKAFSQSNDLTSHLRIHTGEKPFICDVCGQAFRQSSALKTHKKAHANKNLIEARSVLGVMHQPFLGGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00639733;
- 90% Identity
- iTF_00639733;
- 80% Identity
- iTF_00639733;