Ecor009697.2
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- -
- Assembly
- GCA_947095575.1
- Location
- OX352714.1:5211172-5214976[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.012 80 3.6 0.0 13 45 190 222 186 225 0.91 2 11 0.0012 8 6.8 0.1 22 47 227 252 223 262 0.87 3 11 0.68 4.5e+03 -2.0 0.0 21 43 282 304 267 313 0.75 4 11 1 6.7e+03 -2.6 0.0 22 44 368 390 366 394 0.82 5 11 0.0016 11 6.4 0.0 21 46 395 420 388 428 0.84 6 11 0.022 1.4e+02 2.8 0.0 21 46 485 510 478 516 0.88 7 11 0.017 1.1e+02 3.1 0.0 21 46 513 538 509 544 0.85 8 11 0.055 3.6e+02 1.5 0.0 21 44 541 564 530 569 0.86 9 11 0.0033 21 5.4 0.1 23 52 571 600 566 602 0.83 10 11 0.021 1.4e+02 2.9 0.1 21 43 597 619 593 628 0.89 11 11 0.81 5.3e+03 -2.2 0.1 21 35 625 639 617 648 0.68
Sequence Information
- Coding Sequence
- ATGTCAGGTTCACCTGTGTGCAGAATATGTTTAGTGGACAATGTAAGAATGCAATCCATTCAGAGTCCACAGCTGCTAGAAATATTTGAATTCCTTGCAAATAATAAGGTCACACATGAAGCAGTTTCTCTATTGAATAGGGGAGCACCCCTTGTCTCCCCTCTCACTGTCGATCCTGTATCCTTCTACAATATCCCGGACAAGGATGACATAGTTGTGAAGGAGGAAAAAAAGATAAGCCATTTGATGCAGTTTGAGGATGAATGTTCAGATGAATATGATGCTAAGCTAGTTGTGAATGAAGATCAGTGTGTAGAAGTTAATGAAGCTCTTGATAATGAAATAAAGAAAGAAAACACTGAACCTCACGAACAATTCAACCTTGATGACGCACAGAGTAATATTGTAAAGAAGGAGACACAGCTATGTACTACTACTCTTACAGTGAATTTAATCCCCCACAGTACGATACCGAAGAAACCAGGTTCAGTAAAGAAACTAAAAAGTAGTAATAATTCTCACAGTCACCAGACAGAGACAGAGACAAAAACGACTCGTATTACATCCCATAAGAAACGAAACCGGCTAGCACCAaaaaacccattggcttgtaaattctgtgataaaatatttccagctacatataacttacataagcatgtaaaaactcacattggggaaaaaccatacacgtgtactatctgtgaaaaatcgtattctgataaatctgttctgaaacgacacatgaaaattcattccggatgtagaccttacgcttgcggagtttgcggcaaaacatttcctgaaaacagtgatgtcaaaaagcacatgagaatacataccggtgaaaaaccatttgcctgtcgtatgtgcgataagaaattttatgaaaataatcagttggtaaatcatatgatgtatggtcactcggaagaaagatttgtgtgcgtagtgtgtgaaaaatcgtttaccgaactaatcctgttaaaaaaacacataaatagaatgcatcttggattcaaaccatttgagtgtgaatattgtaataaaaaattttatgataattataggttgcaggaacatataaaagtacacactggtgaaaagccatttgcttgtgatgaatgtgaaaaggctttctctaacaaacgcagtttgatcactcacatgagacaacacactggtgaaaaaccgtattcctgtgacgtgtgctataagaaatttacttctaataacgctatgagaaaccatatgagaattcatacagacattaagttatttgcttgtaatagttgtgacaaagcgtttaccgttttagaatacttgaaaaatcacatgaaaatccacatttggggcaggacaaaatctaataagtacgcgtgtgcttgtgaccggtgcggtaaaacgttcgttgataaaagcgttcttaataaacatatgaaaatacacactggagaaaaaccatttatatgtgataagtgtgataagacatttgctgaaaaaggtaacttaaaaaggcacgtaagaatccacacagaagagaggccgtatgcatgtgatatgtgcgataaatcatttgctgaaagtggaaacttaaaagcccataagcgagtgcacacaggtgaaaagccatattcctgtgacgcatgtggaaaaggcttcgcacagcctaattccttgaagaaacatctcgtaactcacactggagaaagacgattttcctgtgttatctgttacaaaacttttacagcaagtaatagcctgaaaatacatatgagaatccacagtggagaaaagccttattcttgcaatgtatgcagtaaatcattttacgagagcagttccttgagtagacataaaagaacgcacacgggagaaaatccgtacacatgcatcgagtgcaataagtcattcagtagaaaagcctatttacagcagcacattttgTCTTGCAGAACCCGTTAG
- Protein Sequence
- MSGSPVCRICLVDNVRMQSIQSPQLLEIFEFLANNKVTHEAVSLLNRGAPLVSPLTVDPVSFYNIPDKDDIVVKEEKKISHLMQFEDECSDEYDAKLVVNEDQCVEVNEALDNEIKKENTEPHEQFNLDDAQSNIVKKETQLCTTTLTVNLIPHSTIPKKPGSVKKLKSSNNSHSHQTETETKTTRITSHKKRNRLAPKNPLACKFCDKIFPATYNLHKHVKTHIGEKPYTCTICEKSYSDKSVLKRHMKIHSGCRPYACGVCGKTFPENSDVKKHMRIHTGEKPFACRMCDKKFYENNQLVNHMMYGHSEERFVCVVCEKSFTELILLKKHINRMHLGFKPFECEYCNKKFYDNYRLQEHIKVHTGEKPFACDECEKAFSNKRSLITHMRQHTGEKPYSCDVCYKKFTSNNAMRNHMRIHTDIKLFACNSCDKAFTVLEYLKNHMKIHIWGRTKSNKYACACDRCGKTFVDKSVLNKHMKIHTGEKPFICDKCDKTFAEKGNLKRHVRIHTEERPYACDMCDKSFAESGNLKAHKRVHTGEKPYSCDACGKGFAQPNSLKKHLVTHTGERRFSCVICYKTFTASNSLKIHMRIHSGEKPYSCNVCSKSFYESSSLSRHKRTHTGENPYTCIECNKSFSRKAYLQQHILSCRTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00638824;
- 90% Identity
- iTF_00638824;
- 80% Identity
- iTF_00638824;