Ecor016704.1
Basic Information
- Insect
- Electrophaes corylata
- Gene Symbol
- PRDM7
- Assembly
- GCA_947095575.1
- Location
- OX352705.1:2129527-2137110[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.0016 11 6.4 0.1 13 44 437 468 433 472 0.78 2 6 0.00025 1.6 9.0 0.2 20 43 472 495 461 500 0.83 3 6 6e-06 0.039 14.2 0.0 21 44 501 524 493 528 0.87 4 6 2.1e-06 0.014 15.7 0.1 21 44 529 552 525 556 0.91 5 6 6e-06 0.039 14.2 0.1 21 46 557 582 553 588 0.86 6 6 0.00017 1.1 9.6 0.1 22 48 586 611 580 614 0.83
Sequence Information
- Coding Sequence
- ATGTCCAAACGCAATTTGCGGCATAAGCCGCGGATAAGTTACTACGAGCCAGAAGAACCCGATTTGGACGAATATGTGTTTTGCGAAAAATGCGGAGACTATGTGTACGAGTATTGCTCTATTCACGGAGCCCTGCTGGTCATACCAGACGACAAGATTGCCACCAAGCCCAATGTCCCACCATATGTCCCTCGCGCGGCGCTTACCATTCCTCACGTGTTCCTGCATATCACATATTCCATAATACCAGATGCCGGGTTGGGCGTATTTACATCGATGGCGCTTCCTTCTGGAGTGCGGTTTGGACCATACCTAGGTCAACGAACTGACGTCGTCAACTCGTCCTACTGTTGGCAGATTTACGACAAGAACCGTAAGCCGCTTCATTGCATTGATGCCGCGGACGCTAACAAGTCTAACTGGATGCGTTATGTCAACTGCGCACGGCACTGGGGGGAACAGAACCTTGTGGCGTACCAGTACCAGGGAGAATTGTATTACAGAACAATCAAAATAATTCCTCGATTTACGGAGCTCATGGTATTCTATGGCAGCGAATTCGCGTGTGAACTGGACGTTGATCTCGGCAAATACAACTCACCAGCTGGATACGCGCAGAAATTTGGTGCACCGGTAGCTAAGAAACGAAAACCGAATGATGAAAATATAAAAATGAAAACCTACGAAGATGAAATAAAAACTGCAAACGCTGGAAAAACTGCTGCTAGTGAGCCGACATCTGCTCAAGGTGTAATCAAAGACATAACAACTGAAACTCAGATAGGGCAAGTAATTCTCACTACAATAGGCCCAGACCAAGATAAAGTCAAAAACACTCTAAGCAAAACAACCACGAAACCCAACTTCAATAAGGTTAAACCAACTAAGAACAATGCAGCTACCAAAAACTGGGCCTCTAAAAACAATAAGACAACCAAAAACAATGAAGTTATTGAGAATAATAAAGCATTAAGAACTGCAGCAAAACAGGACACCGCATGTGTTGTCAAACCAAAATATCTCACTATGAAACAGGAAAGTAACGAAATAGATCAGGATAAAGTAGCGCAGTCGAAATCAAACCTTACAAGGCAAAACAGCTTTCTGGACTTGTATAAATATTGTGATAGTTGCAACAAGAGATTTGTATCAAAGCCAGAGCTTCAAAGACATCTCAGGTTTCATGATCCAAATCGGAAGTATGCTTGTGAGATTTGTAAACTAAGGTATACTTCATTGTTAGTACTAAAGAGCCATCTTAATTCTAACAAAATATGCAATGCAAGGTTTTGTAGGAACGATGACGtagaaaaacataacaaaacttacaatagagaaaagccgtatacctgcaaaatatgcaatgccagatttaccgtaaacggtagtttaaaaagtcatatgagaactcacaccggagaaaagccgtatagctgcgaaatatgcaatgccagatttactcaaagcgctcatttaaaaagccataagagaactcacaccggagaaaagccgtatacctgcgaaatatgcaatgccagatttactcatagcggtaatttaaagaaacatatgagaactcacaccggagaaaagccgtatacctgcgaaatatgcaataccagattgaatcaaagcggtaatttaaaaaaacatatgagaacacacaccggagaaaagccgtatacctgcgaaatatgcaatgccagatttactcaaagtggtagtttaagaatccatatgagaacacacaatggcgaaaagcctacgtgtgaaatatgtaatgccaaattcaccagcagtaaacttttgagaaatcaccttgtgaacacacatcTTATAGATAAATAG
- Protein Sequence
- MSKRNLRHKPRISYYEPEEPDLDEYVFCEKCGDYVYEYCSIHGALLVIPDDKIATKPNVPPYVPRAALTIPHVFLHITYSIIPDAGLGVFTSMALPSGVRFGPYLGQRTDVVNSSYCWQIYDKNRKPLHCIDAADANKSNWMRYVNCARHWGEQNLVAYQYQGELYYRTIKIIPRFTELMVFYGSEFACELDVDLGKYNSPAGYAQKFGAPVAKKRKPNDENIKMKTYEDEIKTANAGKTAASEPTSAQGVIKDITTETQIGQVILTTIGPDQDKVKNTLSKTTTKPNFNKVKPTKNNAATKNWASKNNKTTKNNEVIENNKALRTAAKQDTACVVKPKYLTMKQESNEIDQDKVAQSKSNLTRQNSFLDLYKYCDSCNKRFVSKPELQRHLRFHDPNRKYACEICKLRYTSLLVLKSHLNSNKICNARFCRNDDVEKHNKTYNREKPYTCKICNARFTVNGSLKSHMRTHTGEKPYSCEICNARFTQSAHLKSHKRTHTGEKPYTCEICNARFTHSGNLKKHMRTHTGEKPYTCEICNTRLNQSGNLKKHMRTHTGEKPYTCEICNARFTQSGSLRIHMRTHNGEKPTCEICNAKFTSSKLLRNHLVNTHLIDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00638864;
- 90% Identity
- iTF_00638864;
- 80% Identity
- iTF_00638864;