Basic Information

Insect: Electrophaes corylata
Gene Symbol: prg
Assembly: GCA_947095575.1
Location: OX352703.1:9405988-9407804[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.26 13 6.6 0.7 2 20 178 196 177 200 0.82

2 10 0.0021 0.1 13.2 0.4 1 23 206 229 206 229 0.96

3 10 1.3e-05 0.00066 20.1 3.5 1 23 235 257 235 257 0.96

4 10 4.5e-07 2.2e-05 24.7 4.9 1 23 263 285 263 285 0.99

5 10 6.2e-05 0.0031 18.0 0.0 1 23 291 313 291 313 0.97

6 10 0.00041 0.021 15.4 1.1 1 23 319 341 319 341 0.96

7 10 8.1e-05 0.0041 17.6 1.0 2 23 433 455 432 455 0.95

8 10 0.00034 0.017 15.7 1.8 1 20 461 480 461 483 0.93

9 10 1.8e-05 0.00091 19.7 3.1 1 23 489 511 489 511 0.97

10 10 0.0017 0.086 13.5 0.0 3 23 520 540 518 540 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.26	13	6.6	0.7	2	20	178	196	177	200	0.82
2	10	0.0021	0.1	13.2	0.4	1	23	206	229	206	229	0.96
3	10	1.3e-05	0.00066	20.1	3.5	1	23	235	257	235	257	0.96
4	10	4.5e-07	2.2e-05	24.7	4.9	1	23	263	285	263	285	0.99
5	10	6.2e-05	0.0031	18.0	0.0	1	23	291	313	291	313	0.97
6	10	0.00041	0.021	15.4	1.1	1	23	319	341	319	341	0.96
7	10	8.1e-05	0.0041	17.6	1.0	2	23	433	455	432	455	0.95
8	10	0.00034	0.017	15.7	1.8	1	20	461	480	461	483	0.93
9	10	1.8e-05	0.00091	19.7	3.1	1	23	489	511	489	511	0.97
10	10	0.0017	0.086	13.5	0.0	3	23	520	540	518	540	0.92

Sequence Information

Coding Sequence: ATGGAAGATTCCTTTATCATCGCGAATTTCCATGCGCTGTGTCGGTTATGCCTAAACAAAAGCGCGCTCTCGGTGTCGATTTACGGGGCTGCGCCCGATGACGAAGCTAACGTATCGCTAACCTCCAAAATTGCAGAATGCTGCGAAGTACAGATTGATCCCAATGATGGCCTGCCTGGAAGAATTTGCTACAAATGCTTGCTGAAAGTAGACAAATGTTCCAAATTCAAAATACAATGCATACAGAATGAGAACAGATTGAGACAGATTACCAACCGTGTTAATGATCTGGATAACTCAAACTCCTCAGAACTTAGCAATTATAACTTCAACAACTGCCATGATCAGCAGAAACCTAAGCCGGAAGACTACATTGTTGAAGACAGTGTTGTGATGGTGGTGGATCCAAGCCTCGACTATGACTCATCGGAAGAGTCTGAAAGTGTAGAGCAAGTGGAACCTGAGGTCACAGAAAGAGACAACAACCCAGAGCAAGAAACAAATACAGAGTCATTCTTTAAAAATGTCTCGATGTGTCAATACTGTGATCAAGCCTTTGTATCTCCAGAGAAATGCAAGGAACATGAGATTGCTTACCATGACCCAAATCTGCCATACAAATGTGTGGAATGTAGTCTAGTATTTGCAGAACGCTCACAGTATGTACAGCACACTAAACAAGTACATGGCAATGATAAGCCATATCACTGCCCTGAGTGTGAAAAATGCTTTGGACGACGATCTGATTTGAGAAAACATTCTATCGTACACACAGGCATTAGACCTTACCAATGCCATTACTGCCTTAAAAGTTTCTCTCGTAACACTAACTTGAGTAAACATCTTCGTATTCATGCTGGTCATAAACCGCATGTTTGTCCATTATGTCCAAGGAGTTTTGTCGCCAAAGGGGATTTGGCGCGCCATGTTCTCATTCACTCAGGTATGAAGCCTTACAGATGTCGAAAGTGCCCTCTTACATTTGGCCGACGAGATAAACTCATCAAGCATGAAGTCAAGCACGGACCTGTTACACCAGAGCATAATAACTATTATGAAAACAACCAAGATATGCATGACATGGTTGTGAATGTCAATCCCTTTAGCAATCTTATGACATCCCCAACACAGAATAATACTGATGGATCTCAGGCAGACTATGACCTTCCCAGAGTCCCAGACCACATTTCTGGTGAAAGTAGTTTCAGCAGAGTTCAGAAAACCCCTTCAACATCCAGACAACAAAACTCTCCACCAAAAAAGCAAATACCCGCTAAGAATAGGCCTAAGAATATTAAGTGCCACCAGTGCCCTAAGAGATTCTCATCTTTGGATGCTTACAAAACGCACGTCTCTATTGCCCACATTGGGTCTAGAGTGTTCCAATGTAAAGTTTGCTTTAAGAAGTTTGCCCGGAAAAGGGAACTAGATCGACATACTCCTATGCATTCAGGTATGAAGCCATTTTCGTGCAGTCAGTGTGACAAAAAGTTCACTAGAAAAGACAAACTTGACAAGCATGAGCAGAGTCATGAATGTTTGGTTGTGAATATGCCTTGCATTGAATGTGGTGCCACATTTGAAAAGAAAGCCGATTTGGTTGCTCACATCAAATCTCATTTTACTGATAATTTTGATGATAAAATCTCTCAAATAAAGAAAGAAGATGAACCTGAGTTCCAGCTTGATGACAATTTTTATGATTTAGAAACTTGA
Protein Sequence: MEDSFIIANFHALCRLCLNKSALSVSIYGAAPDDEANVSLTSKIAECCEVQIDPNDGLPGRICYKCLLKVDKCSKFKIQCIQNENRLRQITNRVNDLDNSNSSELSNYNFNNCHDQQKPKPEDYIVEDSVVMVVDPSLDYDSSEESESVEQVEPEVTERDNNPEQETNTESFFKNVSMCQYCDQAFVSPEKCKEHEIAYHDPNLPYKCVECSLVFAERSQYVQHTKQVHGNDKPYHCPECEKCFGRRSDLRKHSIVHTGIRPYQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLARHVLIHSGMKPYRCRKCPLTFGRRDKLIKHEVKHGPVTPEHNNYYENNQDMHDMVVNVNPFSNLMTSPTQNNTDGSQADYDLPRVPDHISGESSFSRVQKTPSTSRQQNSPPKKQIPAKNRPKNIKCHQCPKRFSSLDAYKTHVSIAHIGSRVFQCKVCFKKFARKRELDRHTPMHSGMKPFSCSQCDKKFTRKDKLDKHEQSHECLVVNMPCIECGATFEKKADLVAHIKSHFTDNFDDKISQIKKEDEPEFQLDDNFYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00318316;
90% Identity: iTF_00632992;
80% Identity: -