Egri039216.1
Basic Information
- Insect
- Eilema griseolum
- Gene Symbol
- -
- Assembly
- GCA_963662185.1
- Location
- OY759253.1:18111853-18114863[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3 3.9e+02 3.2 0.5 2 20 26 44 25 45 0.90 2 16 0.0029 0.38 12.7 0.2 2 23 74 96 73 96 0.94 3 16 0.018 2.3 10.2 1.4 5 23 126 144 123 144 0.93 4 16 0.024 3.1 9.8 2.4 1 20 148 167 148 171 0.94 5 16 4.7e-05 0.006 18.4 1.3 3 23 230 251 229 251 0.98 6 16 7.2 9.3e+02 2.0 0.0 2 23 276 298 275 298 0.89 7 16 0.086 11 8.1 0.5 3 23 323 343 321 343 0.92 8 16 0.0003 0.039 15.8 0.1 1 21 347 367 347 368 0.96 9 16 0.76 99 5.1 0.1 1 23 409 432 409 432 0.94 10 16 0.12 15 7.7 0.3 2 23 458 480 457 480 0.96 11 16 0.0064 0.82 11.7 0.8 2 23 504 525 503 525 0.95 12 16 0.00022 0.028 16.3 0.0 1 23 529 552 529 552 0.97 13 16 0.042 5.4 9.1 0.6 1 23 556 579 556 579 0.97 14 16 4.9 6.4e+02 2.6 0.5 1 23 584 609 584 609 0.89 15 16 0.00037 0.048 15.5 1.5 1 23 618 641 618 641 0.97 16 16 0.00068 0.087 14.7 0.9 1 23 651 674 651 674 0.96
Sequence Information
- Coding Sequence
- ATGGCGAAACGGAACGCGGCGATAGTGTTGCAATACTCAACAGCATATCCGTTCAGATTCCGAGGGAAGGCTTTCCTATGTGTCTACTGCTGCGAGGGTTACGAAGATCCCATCCATTTAAGGAGACATGTCGATTGTAACCATAAAAAGTTCAATGTCTCTACAGCATTCGCCCACCTTTACAGAAAAGACTACCTGAAAGTCGACTGTACGAGCTTAAAGTGCAGGCTATGTTCTAAATCTTTTCCCAATCTCGAAGAAATCGCTAAACATCTCAAAGCAGAACATGATTGTAAAGAAACTCGGCAGCTTCACCTTGACTCCGAAATAGGTTTACAACCGTACAAGTTGGTGAAAGACAAATGGATTTGCATCTTGTGCGATAAGAAGTTTGCTACTATAACTAGACTTTGTCGTCATATGGCGTCGCATTATCAACAGTTCACGTGTGATGTTTGCAAAAGAGGCTACACAACACTCGAGGCTTTGAAATACCATGAAAAATGCAGTCATTCAGGGAAATTTGTATGTCggACCAGATTGGGAATTCGCGGACGTAGACACATTGAGCTTGAACCAAAAAAGAAACTAACCCTTGTATACCAGCCGCCGCAGCGGCGAAACGCTGAACTAATACTAACTTATTCCACCGCGTTCCCTTTCAAAACTAGATTTAGTCAAATACTTTGCTCATATTGCCATGAAGAGTTTAACACCCTCTCTGACTTGAGATATCACATGAAAGTAGAACATATTAACTcagattataaaaatgtattttacagGGCTAAAGATAATCTTATCAAAATTGATATAACCGATTTAAGATGCAAAATTTGCGCTGAAGAGATCCAGGATGTTGATGGTCTTATGAGCCATTTATATAGCGTACATAATAAACCAGTCAGATTCAATGCTCGATATGGCGTTCTGCCTTACAAACAGAATTCGGATAATCATTGGAGTTGcatatattgtaataaaatattcaatgcaTTCATTTCATTTAAGCGACATATTGTTACACATTTCATGAATTATGCATGTGACAATTGTGGAACGACGTTTGTCTCTGATTACGCCTTACGAGATCACCAACGCCAGGTTAAATGCTTTAGAACGGCTTACAAGCCTCGAAACGGGAGAGTTTTGAAACCCAGGACAAACGCAGAAATCATTCTCCAATGCTCTACAGCTTCCCCTTTTAGAACTTGGAAGACAAATTTCAATTGTGTGTTTTGTAGGGTACAAAGCAATGATCCTAGTGGTTTGAGGCTACATGTAGTTACAGCACACGCTAATTATGACGTCAAAGCGGCATTTTACAAGAAGCTAGGAAAAGAATTTCTGAATGTCGATATAACTGATCTCCAATGTAAACTTTGTTTTATGACAATACCAACTTTTGACAGTCTAATTTACCATCTAAAGAGCGCTCATCAGCAGCCAATAAATGACGACGCACAGGTAGGAGTTCTGCCTTTCCGATTGAACAATGGATCGTTATGGAAGTGTACTATATGTCCAAATGAATTCAAAGATTTCTTGTCTCTTAAAAAGCATACTTCAGAACATTTCCAGAATTACGTTTGCGACACTTGCGGAGAAGGTTTTATAACAGAATCTGCAATGATAGCTCATACGAAAATACCCCACGAAAACAAATACACCTGCAGTCGTTGCGTAGCTACGTTTTCTTCGTTGGATGAAAGAAATTTACATGTAAAGTCGCAGCACACGTCCATGCCTTACATGTGTATGTACTGTAAGGATAAACCGCGGTTTGCGAATTGGGAAGTTCgcaaaaaacatctgatgacaGTACATAATTACAAAACTGGAGCCGATAAGTATGAGTGTACAACTTGTCAGAAGATTTTTAAGACCAGATCTGGGAAATACAATCATATGGCAAGAGTCCACAGAATTAAGAAAGATTCAGACCTAGGCTTTCCTTGTCAGAGGTGCCCGAAAGCATTTACTACTAAACTGTTCCTGGACAAGCATATTGCCAAAAAGCACTTTGACGTATAA
- Protein Sequence
- MAKRNAAIVLQYSTAYPFRFRGKAFLCVYCCEGYEDPIHLRRHVDCNHKKFNVSTAFAHLYRKDYLKVDCTSLKCRLCSKSFPNLEEIAKHLKAEHDCKETRQLHLDSEIGLQPYKLVKDKWICILCDKKFATITRLCRHMASHYQQFTCDVCKRGYTTLEALKYHEKCSHSGKFVCRTRLGIRGRRHIELEPKKKLTLVYQPPQRRNAELILTYSTAFPFKTRFSQILCSYCHEEFNTLSDLRYHMKVEHINSDYKNVFYRAKDNLIKIDITDLRCKICAEEIQDVDGLMSHLYSVHNKPVRFNARYGVLPYKQNSDNHWSCIYCNKIFNAFISFKRHIVTHFMNYACDNCGTTFVSDYALRDHQRQVKCFRTAYKPRNGRVLKPRTNAEIILQCSTASPFRTWKTNFNCVFCRVQSNDPSGLRLHVVTAHANYDVKAAFYKKLGKEFLNVDITDLQCKLCFMTIPTFDSLIYHLKSAHQQPINDDAQVGVLPFRLNNGSLWKCTICPNEFKDFLSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYTCSRCVATFSSLDERNLHVKSQHTSMPYMCMYCKDKPRFANWEVRKKHLMTVHNYKTGADKYECTTCQKIFKTRSGKYNHMARVHRIKKDSDLGFPCQRCPKAFTTKLFLDKHIAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00157508;
- 90% Identity
- -
- 80% Identity
- -