Egri041434.1
Basic Information
- Insect
- Eilema griseolum
- Gene Symbol
- -
- Assembly
- GCA_963662185.1
- Location
- OY759255.1:15249607-15253235[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.081 10 8.2 7.1 1 23 153 176 153 176 0.95 2 18 4.1e-05 0.0052 18.6 1.1 1 23 185 208 185 208 0.96 3 18 0.014 1.8 10.6 0.5 2 23 221 243 220 243 0.97 4 18 0.00061 0.078 14.9 1.2 1 23 252 275 252 275 0.97 5 18 0.00038 0.049 15.5 2.7 1 23 287 310 287 310 0.97 6 18 7.8e-06 0.001 20.8 0.5 2 23 342 364 341 364 0.97 7 18 0.00098 0.13 14.2 1.6 2 23 374 396 373 396 0.96 8 18 0.1 13 7.8 1.8 3 20 402 419 400 421 0.91 9 18 0.0029 0.38 12.7 0.6 2 21 426 445 425 448 0.94 10 18 0.059 7.7 8.6 1.2 3 23 458 479 456 479 0.95 11 18 0.043 5.5 9.1 4.0 1 23 484 507 484 507 0.91 12 18 0.00017 0.022 16.6 1.8 2 23 520 542 519 542 0.96 13 18 0.023 2.9 9.9 1.5 1 23 565 588 565 588 0.91 14 18 0.94 1.2e+02 4.8 0.1 2 23 592 613 591 613 0.89 15 18 0.034 4.4 9.4 1.7 2 23 619 640 618 640 0.97 16 18 8.6 1.1e+03 1.8 0.6 2 23 647 670 646 670 0.91 17 18 0.021 2.7 10.0 0.1 1 23 706 728 706 728 0.97 18 18 0.093 12 8.0 2.0 1 23 734 757 734 757 0.97
Sequence Information
- Coding Sequence
- ATGTCAGATGCAGATGTTAAAGTAAAAGTTAAAATCGAAAGGCAGGATCCTACCTCATTTTTGCCTGAAGAGCCTATGTCttatgaaattaaaaagaaaaagaaaaaaaagaaaaggaaggTCATTGAAGATCCATTTAAAGATATTGATGATAAAAGCATACTACCAGTAACTATAGAAATGGCACCAGATGCTGAAGTCACCACCTTGGACCCAGAGGTTAATATAAAagcggaaaatattgaagttgaaATAGATTTTAACGATTTCACCGACACCGCAGGTCTCATGTTAGGAGCATCCCACAGTGACGATAGCATACAAGATGAGCCAGCTGTGAAAATCGAGAATCACAATCATACTGCCCTGCTGCTCACTTTCGAGAATGTCATCAGTGATAAACATCTGTTCACCCCTAAGGAAGAGCGAGACGTCAATGTCACACCTAAACTGGACCACTTTTGTAAAGTATGCCATCTTGTATTCCAATCGACGAAAACGTTAAGAATGCATCAGAAACGGAAACACAAAGTGTTCAGAAAATCATTCAAACATATTTGTGATTACTGCGGTATGTCCTATGAAACGAAAAATAGTTTAGTTGCACATATTAAACGGAAACATGGACCGGATTCAACACCTGATGATAATGAGGAAAAGACCTGTGAAATATGTGCTTTAGTATTTAAAGGTATGGCCAGGTTACGTATGCATATGAGACGGAAACACGGTTCATTTCAGGACACTTTCTTGCACGAATGTCAGGACTGTGGTCTGACTTATGACAAATATAGAAGTTTAATTGTGCATATACAACGTAAACACTCCAATCAAATAAAACCTGAGATTAATCAATGGTACAAATGTATGTTTTGTCAAAAGGTGTTTTCTAAAAGAGAAACTTATGCAAGACACGTACAAAGAAACCATAGGATTACAGATGAATCTATAAAGCAAGAAAATGTTTTAGAGAAGTCAGAGGCAGATTTGGGGGATTATAAAAATGAACAAACAGGTGAAATAACTTGCAAGGAATGTCCTCTAGTCTTTTCATCGGTAAGTTACCTAAAACTGCATATGAGAAGAAAGCATAATGCGTTGAAAGAAGACTTCAGATTGAAATGTAGAATTTGCAACTTGTCTTACAACAAAATTGAAAGTCTTAAACGCCACGTAAGACGGAAACATGATACGGGATCGCATTGCGAAGTGTGCAATAAACAATTTGATACAAGAGAAATGTATTTGAATCACTCACACACAAAAATTATAAAGGAGTGCTCACTCTGCGGACTCATATTTGCTTCTCAAGGTGGTTTAGCCAAACACTTAAGGTGTACACACAAAATAGACTCACCGAAAACGATATTCTGCAGCCTGTGCAACGAAGGCTTTCATGACAAACGTCAACTAAAACCGCATTTAATGAAAGTGCATTTAAAAGTTTCTTACACGTGTATACactgtaaaaaagtatttaaagcgAAAGAGAGTTACCGGAGACATGTTCTGTTTAAGCATCCTACTGCAAACCCTGTTAACAACACACAATTACAGAAATGTGAGCAATGTACTGAAACGTTTAAGGATGAATTTGAGCTTTGCaaacatataaatatagtaCATAGACATCAAGATGAAAATATGGATAATGTACACATAAAGAAAGAAGatgaagatataaaaaataatttccaaTGCACGAAATGTCCAGAAGTTTATTTAACATGGGAACAGTTGAAATTACATTATGTACAATGTCACAACACGACTCAGTGTCAGATCTGTGGCGAGATACTACCTGGGAACGAATTacaaaagcatataaaaaatttacataaattctCTGAGATGCAATGCAAATTCTGTGAGTTTAAAACTAATGTTAAAATAAGCTTGACTCAACATATGTTGAGACATAAGAACGCTGCAACGATACGTTGTAACTACCCGGGTTGTAGATATAAGACTTTCTATGAAGGTGCTATGGAGAAGCATAGCAAAAAGCATCTTGATCAAGGAGTCAAACTCCAATGTACTAAATGTCCGTTTCAAACGATgaacaaatacattttaaagtatCATGAAGAGGCGCATGCAACTGGTGTAAAAAGGTATATGTGTGATCAGTGTGATTATGCGACAATATTACCTGCGAACTTAGTGCAACATAAGTATAAACATTCTACGGAGAAAAGGTTTAAATGTGACGTATGCCCTTTCGCAACCAAGTACAATACATCGTTAAGGTTCCATGTGAGAAAAAAGCACTGTGATCTCCCAACATTcagttaa
- Protein Sequence
- MSDADVKVKVKIERQDPTSFLPEEPMSYEIKKKKKKKKRKVIEDPFKDIDDKSILPVTIEMAPDAEVTTLDPEVNIKAENIEVEIDFNDFTDTAGLMLGASHSDDSIQDEPAVKIENHNHTALLLTFENVISDKHLFTPKEERDVNVTPKLDHFCKVCHLVFQSTKTLRMHQKRKHKVFRKSFKHICDYCGMSYETKNSLVAHIKRKHGPDSTPDDNEEKTCEICALVFKGMARLRMHMRRKHGSFQDTFLHECQDCGLTYDKYRSLIVHIQRKHSNQIKPEINQWYKCMFCQKVFSKRETYARHVQRNHRITDESIKQENVLEKSEADLGDYKNEQTGEITCKECPLVFSSVSYLKLHMRRKHNALKEDFRLKCRICNLSYNKIESLKRHVRRKHDTGSHCEVCNKQFDTREMYLNHSHTKIIKECSLCGLIFASQGGLAKHLRCTHKIDSPKTIFCSLCNEGFHDKRQLKPHLMKVHLKVSYTCIHCKKVFKAKESYRRHVLFKHPTANPVNNTQLQKCEQCTETFKDEFELCKHINIVHRHQDENMDNVHIKKEDEDIKNNFQCTKCPEVYLTWEQLKLHYVQCHNTTQCQICGEILPGNELQKHIKNLHKFSEMQCKFCEFKTNVKISLTQHMLRHKNAATIRCNYPGCRYKTFYEGAMEKHSKKHLDQGVKLQCTKCPFQTMNKYILKYHEEAHATGVKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCDVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00405296;
- 90% Identity
- iTF_00636790;
- 80% Identity
- -