Egri016397.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- LITAF
- Assembly
- GCA_017562165.1
- Location
- chr13:20429306-20466504[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.059 1.4e+02 2.8 0.1 2 12 71 81 70 86 0.81 2 3 5.5e-25 1.3e-21 76.6 13.3 2 69 245 313 244 314 0.97 3 3 3.5e-27 8e-24 83.6 16.1 2 69 339 406 338 407 0.97
Sequence Information
- Coding Sequence
- atggcAGAAAccaAAGTGTACTACCATGGAACAACAGTGATCGATGGTTCCGGACCAGCGAACCCACCGCCCTACACATCAGGACCACCCCCTGGGCCGTACCCCCCACCTCCTGGACCGTACCCTCCACCCCCTGGGCAATATGGCCCGACCGTGGTTCAAGCCACCGTCATTCCTGGAGCAGTGCTAGTGACCGAGCAGATGGGCCCAAACCCCGCTCGAATCACATGCAAATCCTGTAACTATGAATTGCTGGCCCTGTGTCTGTATTCCCTACTGCATGGACTCTTGTATGAACACGGATCATTACTGCCCGAACTGCAATTCGTACGTGGGAACCTATCTCACATAAGAATACTAACCAGCCTGAAACATAAGACTACAAATTTGGACAATCCAAAACCTTTCTGCAACCGCAGCAATGAACGTGGCTGCCCCACCAATGCTTCTACAGCCGATAATGTCGCCACCAAGGGTTACGGAATCGACGTAACAGACAAGCCTCTAACGGACACACCTCCACCGTATTCGTCTGGGGCTCAGACAAGCCGCGCGCCAGAGCCAATAACCCAAGCCCCAACAATGGGAGTCCCTATGGGAGTAATGCACGCTCCAGTTGGTATGGTCGGTACACATGTGGGCGTTGTTGGTGCAAATGTTGGAGTAGTTGGAGTCAACGTGGGCCATGGAACCACAATGGTCCCAGTAGTGATGGCTCAGCAGATGAGTCCGAGGCCTGTGGCGATAACCTGCAAATCTTGTAATATGAATATCACGACAAGAGTTGACAAAAAACCTACATGGAAGACACATTTCTTTGCAGGAATAATATGCTTAATGGGgtgCTTCTGCGGATGTTGTTTGATTCCTTATCACATCGATTCGTGTCTTAATGGAGATCACTACTGTCCGAACTGCGAAGCGTACATTGGAACTTATACGACATATTCATTTGTGGACGATACAAATTTGGAACGATTAGATATCAAAATGAATGTGGCGTTAGTAGGACCGGACCCCACAGCGATTGTCTGTCCGTCTTGTCAAGTGAGCATCACTACCAGAGTTGAAAGAAAAGCTACCACCAGGACTCACGTTATTGCGGTTCTGCTTTGTGTGTTTTTATGCTGGCCCTGCATTTGCGTCCCGTACTGTATGAAGTCTTGCAACAATGCGAATCACTACTGTCCTAACTGCAGTGCATATTTAGGAACTTATATGAATTAG
- Protein Sequence
- MAETKVYYHGTTVIDGSGPANPPPYTSGPPPGPYPPPPGPYPPPPGQYGPTVVQATVIPGAVLVTEQMGPNPARITCKSCNYELLALCLYSLLHGLLYEHGSLLPELQFVRGNLSHIRILTSLKHKTTNLDNPKPFCNRSNERGCPTNASTADNVATKGYGIDVTDKPLTDTPPPYSSGAQTSRAPEPITQAPTMGVPMGVMHAPVGMVGTHVGVVGANVGVVGVNVGHGTTMVPVVMAQQMSPRPVAITCKSCNMNITTRVDKKPTWKTHFFAGIICLMGCFCGCCLIPYHIDSCLNGDHYCPNCEAYIGTYTTYSFVDDTNLERLDIKMNVALVGPDPTAIVCPSCQVSITTRVERKATTRTHVIAVLLCVFLCWPCICVPYCMKSCNNANHYCPNCSAYLGTYMN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -