Egri008300.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr24:7697327-7701385[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.022 69 3.7 0.2 21 43 22 44 5 53 0.79 2 13 0.062 1.9e+02 2.3 0.0 21 44 50 73 46 81 0.78 3 13 0.051 1.6e+02 2.6 0.0 22 48 79 104 76 110 0.86 4 13 0.027 82 3.5 0.1 16 43 129 156 117 161 0.83 5 13 0.0089 27 5.0 0.0 21 49 162 189 157 193 0.86 6 13 0.0086 26 5.1 0.0 18 43 187 212 185 218 0.87 7 13 0.013 40 4.5 0.1 21 49 218 245 215 250 0.83 8 13 0.45 1.4e+03 -0.4 0.0 19 44 244 269 241 278 0.72 9 13 0.045 1.4e+02 2.8 0.0 22 49 275 301 272 305 0.84 10 13 0.0021 6.4 7.0 0.2 18 49 299 329 296 333 0.86 11 13 0.0089 27 5.0 0.1 18 43 327 352 325 358 0.88 12 13 0.011 33 4.7 0.0 21 43 358 380 353 386 0.88 13 13 0.0068 21 5.4 0.0 21 44 386 410 383 418 0.82
Sequence Information
- Coding Sequence
- ATGGAAGAGAAAAATAAGGCATCACAGCCTGCCAACCTAAGAAGACATAAACTAATACATGCTGGAGAacaaccatttgaatgtgacatGTGTGATTATAAAGCATCACAAGCAGAcgcattaaaaaaacacaaattaacacatactggagaaaaaccatttgaatgtgatatctgtgattatagagcattgAAAGCAGCTTCCTTGAAAAGACACAAACTaatacatactggagaaaaaccatttgaatgtgatatgtgtgattttaGAGCATTGGGAGTAGCCAACTTGAAAAGACATAAATTAAGACACACTGGAGAAAAatcatttgaatgtgatatgtgtgattatagagcatcggAAGCAGGCCACTTGAAAAGACATAAATTaagacatactggagaaaaaccatttcaatgtgatgtgtgtgattatagagcttCGGAAGCAGGCAACTTAAGGATACACAAATTAAgtcatactggagaaaaaccatttgaatgtgatgtgtgtgattatagagcatcggTAGCAGGTAACTTGAAAAGACATAAATTaagacatactggagaaaaaccatttaagTGTGATATATGTGATTTTAGAGCATCGGGAGCAGGCAATTTGAAAAGACATAAATTaatacatactggagaaaaaccattcgaatgtgatatgtgtgattttaGAGCATTGCGAGTAACCAACTTGAAAAGACATAAATTaagacatactggagaaaaTTCAGTTGAATGTGATatctgtgattatagagcattgACAGCAGCTTCCTTGAAAAgacacaaattaatacatactggagaaaaaccatttgaatgtgatatgtgtgattttaGAGCATTGGGAGTAGCCAACTTGAAAAGACATAAATTaagacatactggagaaaaaccatttgaatgtgatatgtgtgaataTAGAGCATCGGAAGCAAGCAACTTGAAAAGACATAAATTaagacatactggagaaaaaccatttcaatGTGATGTGTGTGATCATAGAGCATCGGAAGCAGGCAACTTGAAAAGacataaattaacacatactggagaaaaaccatttgaatgtgatatatgTGATTTTAGAGCATCGGAAGCAGGTAACTTGAAAAGacataaattaacacatactggagaaaaaccatttgaatgtgatatatgTGATTTTAGAGCATCGGAAGCAGGTAACTTGAAAAGACATAAATTAACACATAggtactggagaaaaaccagtTGA
- Protein Sequence
- MEEKNKASQPANLRRHKLIHAGEQPFECDMCDYKASQADALKKHKLTHTGEKPFECDICDYRALKAASLKRHKLIHTGEKPFECDMCDFRALGVANLKRHKLRHTGEKSFECDMCDYRASEAGHLKRHKLRHTGEKPFQCDVCDYRASEAGNLRIHKLSHTGEKPFECDVCDYRASVAGNLKRHKLRHTGEKPFKCDICDFRASGAGNLKRHKLIHTGEKPFECDMCDFRALRVTNLKRHKLRHTGENSVECDICDYRALTAASLKRHKLIHTGEKPFECDMCDFRALGVANLKRHKLRHTGEKPFECDMCEYRASEASNLKRHKLRHTGEKPFQCDVCDHRASEAGNLKRHKLTHTGEKPFECDICDFRASEAGNLKRHKLTHTGEKPFECDICDFRASEAGNLKRHKLTHRYWRKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635644;
- 90% Identity
- iTF_00635644;
- 80% Identity
- iTF_00635644;