Egri010620.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr18:24064839-24074079[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00078 0.044 14.3 2.4 1 23 301 324 301 324 0.92 2 11 0.003 0.17 12.5 5.8 1 19 335 353 335 357 0.92 3 11 0.00041 0.023 15.2 3.9 2 23 363 384 363 384 0.97 4 11 0.00013 0.0073 16.7 1.6 1 23 388 410 388 410 0.98 5 11 0.00035 0.02 15.4 0.7 2 23 567 588 566 588 0.95 6 11 0.11 6 7.6 0.3 3 23 609 630 607 630 0.93 7 11 9.2e-07 5.2e-05 23.5 4.1 1 23 636 658 636 658 0.99 8 11 0.0012 0.067 13.7 1.5 1 23 663 685 663 685 0.98 9 11 0.00018 0.0099 16.3 2.8 2 23 692 714 691 714 0.97 10 11 0.85 48 4.7 0.7 1 19 722 740 722 741 0.86 11 11 0.028 1.6 9.4 2.6 1 19 752 770 752 775 0.95
Sequence Information
- Coding Sequence
- ATGTCCGATAACGTGTTCATTGCGCTGTCCATTAATTCCCCAGACATGGAAGGCAacgaaatatgtatttatactgGTTTCTGTAATGTAAAATTGGTAGAATCCTGTAATATCAGTGTCAGTGACTCCGATCAAGTCGAAACAGAAGTGGATGACTCAAATTCGTCCATTGACTGTGATATAAATAAGATGCCAGTAATCTTGTCTGATGCTAATATTTGGCCAAGTCAGCCGGAAAATGTGTGGATAGATCCTTCAAGAAGTCCATATGTGTATAACCATTATGATACTGCACAACAGCCTTGCTCAGTTCTAGGAGGTTTCAAGCAGCCTTACTCCATCCTCGATGCAGGTTGCAAACAGCCCTACTCTGCCATAGATGGAGGTTGTAAACAGCCTTACTCTGTCCTTGATGGAGGTTGTAAACAGccattctctgtccttgacggAGGTTGTAAACAACCCTACACTGTCCTTGAAGGAGGTTGCAAACAACCTTGCTCTGAAGGAGGTGGAATCACTATCCAGCAACATAACACTTACATTACCCAGAATGTTTACAACTATGATAATCAGATGCAGAAAAATGAGCTAGACTTCAATGATTGTGAGAATGAGAAAAGTCTAAGAGATTTGACAGACTCTTCCTATGAAGACGATCACTCGGAGAGTGATATGTTTCTCTCTGAGCTATCAAAGGTGAATAAGAAGATAGATGACACTGAAGAGATGAGTAAAGTAAGCAGTAAGGCAGAAAATAATGATGCACTGAAACAGTTAATGTCATCAACCATCCAGTCCACCTTCGAAGCAGCGGAAGACCATAATTGCTCGGCCTTAGCGGCTGACCACGAAATTGTCATTGATGAGATTCAAGCCCCCACTCCTCATAAAAAGAAGTACCAATGCGACAAATGTAAGCAAATCTTCCACCAACTCTCAGAGTTCCGCCAACACATGGTCGGTAACCACACCAACTACAAGGTCCTCAAAGACAAAGGCTTCTCCTGCCCCGAGTGCGGCAAGCACTTCTCAAACAACTTCAAGTACCGAAACCATTGCCTGGGACATGGAGATCCAGAGAGAGAATGTTCTAAGTGCTTCAAAATATTCTCCTCAAAACACACTCTAAAGAACCACGCAAAAATCCATGAACGCAAGTTCCCATGTCAGTATTGTTCCAAGTCCTACGCTATGGCCGAAACTTATAAAAGGCACttgaaaaaacatttcaactttGTGTGCGACAAAGAGGGGTGTTTCTTTATAACTGATTCAGATGCAAAAAGGGACGACCACGAGTATGATCACATTGAGTTCTGTGTTGATCAAATCAATCAGGGTCTCAAACAGTCAGAGGTAGAAGGATCATTCATGGATGATCTGGGTGAAGATTTTGAACATGATCTGATCACTACAGAGGATGATTTGAAAATGGAATTCTCTGAACTGGAAAAACATGATAAAGGCGATTTAGAGAAGAACGAACATTCCGATATAGATATAAGTGAAGATATGGTGGAAAGTAATCTTAAAAAGAAGAACTTTGAAGATaataaaatgaaagaaaaagaTAAGATTCAAATGGAGCAAGATGAAAGGGTGAAAATGGCTGACTCGGTCATAGCTAAAGTCATGTCCAATAAAGTATTTCTGCTGAACTCCAAGACAGCGAAGAAACAAGTGCGGGGACATAAGACTTGCCAAGCCTGCTCAAAGTCGTTCGACAGGATATCAGACCTGAAGCGTCACCTGATAGAGCATATCGTGAAGTCTACCCTGGCCAAGTCCGTCAACAGTCGACAGGGGATACTCAAACTTAACTGTGAGATTTGTCAAACTGCATCGTTCAACTCCCTCGACAAGTACAAGGCCCATCTCCGCGAGCACGCAAAACTCACCCTCTACAAATGCACCTTCTGCGACAAATCATTCAGCGATTCCAGCAACTTCTCCAAACACAAAAAAGTACACGGCATCTCCTACTACCAGTGCGACTTGTGCCACAGAAAATTCAACTCTAAACTCATGATTGCAAAGCACATCGAGGTTCACGCCAAGAATAAACCAGTGGAATGTAAGATATGCAGACGCGTGTTTCACTTCAAGTCTATGCTGAACAAGCACGTTAAGACTTTGCACACGAAGCCGGTAAGTGTGAAATTCCCTTGCAGGTTTTGCACGGAGTCTTTTAAGAGTTTGAAAGAGAAGTGGGACCACGAGTGGATGGTTCATAGTATTAGGAAGATGGTGTATGACTGTCTTGTCTGCGACGCTAAGTTCAGAAAGTTTTCTGAGCTAAAAAGGCATTGTTCCGATGAACATGCGGTCGAAATTCCGACGCAGAAAAAGTTGTTGCAAAAGTCCGTTTGA
- Protein Sequence
- MSDNVFIALSINSPDMEGNEICIYTGFCNVKLVESCNISVSDSDQVETEVDDSNSSIDCDINKMPVILSDANIWPSQPENVWIDPSRSPYVYNHYDTAQQPCSVLGGFKQPYSILDAGCKQPYSAIDGGCKQPYSVLDGGCKQPFSVLDGGCKQPYTVLEGGCKQPCSEGGGITIQQHNTYITQNVYNYDNQMQKNELDFNDCENEKSLRDLTDSSYEDDHSESDMFLSELSKVNKKIDDTEEMSKVSSKAENNDALKQLMSSTIQSTFEAAEDHNCSALAADHEIVIDEIQAPTPHKKKYQCDKCKQIFHQLSEFRQHMVGNHTNYKVLKDKGFSCPECGKHFSNNFKYRNHCLGHGDPERECSKCFKIFSSKHTLKNHAKIHERKFPCQYCSKSYAMAETYKRHLKKHFNFVCDKEGCFFITDSDAKRDDHEYDHIEFCVDQINQGLKQSEVEGSFMDDLGEDFEHDLITTEDDLKMEFSELEKHDKGDLEKNEHSDIDISEDMVESNLKKKNFEDNKMKEKDKIQMEQDERVKMADSVIAKVMSNKVFLLNSKTAKKQVRGHKTCQACSKSFDRISDLKRHLIEHIVKSTLAKSVNSRQGILKLNCEICQTASFNSLDKYKAHLREHAKLTLYKCTFCDKSFSDSSNFSKHKKVHGISYYQCDLCHRKFNSKLMIAKHIEVHAKNKPVECKICRRVFHFKSMLNKHVKTLHTKPVSVKFPCRFCTESFKSLKEKWDHEWMVHSIRKMVYDCLVCDAKFRKFSELKRHCSDEHAVEIPTQKKLLQKSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634821;
- 90% Identity
- iTF_00634821;
- 80% Identity
- -