Egri016831.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr10:21537722-21542071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0082 0.46 11.1 1.0 1 23 240 263 240 263 0.97 2 17 0.015 0.85 10.2 2.2 1 23 268 291 268 291 0.92 3 17 0.55 31 5.3 2.3 2 23 295 316 294 316 0.95 4 17 0.0033 0.19 12.3 0.9 3 23 323 344 322 344 0.96 5 17 0.047 2.6 8.7 1.0 3 23 410 431 408 431 0.92 6 17 0.00075 0.042 14.3 3.9 1 23 437 460 437 460 0.96 7 17 0.00076 0.043 14.3 0.4 2 20 464 482 463 484 0.94 8 17 0.0057 0.32 11.6 0.1 2 23 493 515 492 515 0.94 9 17 5.6e-05 0.0031 17.9 2.0 1 23 520 543 520 543 0.96 10 17 0.02 1.1 9.9 0.1 2 23 556 577 555 577 0.93 11 17 8.2e-05 0.0046 17.4 1.3 1 23 583 605 583 605 0.98 12 17 0.63 36 5.1 0.1 2 20 611 628 610 630 0.79 13 17 1.4e-05 0.00081 19.7 0.5 1 23 640 662 640 662 0.97 14 17 0.0026 0.15 12.6 0.7 1 23 699 722 699 722 0.97 15 17 0.004 0.23 12.0 0.9 1 23 728 750 728 750 0.98 16 17 0.0027 0.15 12.6 7.7 2 23 757 778 756 778 0.96 17 17 0.0067 0.38 11.3 3.8 1 23 784 807 784 807 0.96
Sequence Information
- Coding Sequence
- ATGGATGATACAGGCACTTCAATTGACCAACTGAATCGGGAATGGTTAAGAAATAAACTCTCCACCTTGTGGACAGCACCACAGCACTGTGGACTGTGTTTGGAAACCACAGGAGAGTTATACCCATTGAATGCAGAGTTTCTTCTCAGCAAATGGATTCACACCAAGTCACTGAAGAATATCATTAACACTGTTTTGGTGTGTGATGTTCAAGACTTTGCAAGCAGTGAAATGATATGTAAGCAGTGTGTAGATAATGCAATACAAAGTTATGTTTTTACTGAAAACACTAAAAGAATATTTAACCTCATAAAAGGTTGTGTAAATGACTTACTTTCAAAAGTCACAGACCTGAACAATGAGTTAGAAGGATCACAAAccgaaaactatacaaattctAATGTAATGATTGTTGTTGAATATGATAATGAAGTAACAGATAATGTTGATAAAGCACCTCAGCTGTATAATAATAGATCAATGAAAAGTCTTCCACAAAAagaattaaattcaaaaaaattagATGGAAAAGTTGTTCCACAAAACAATGAAAGTAAGCCTACCCAACGAGTTGTTAAATATCCTAGAACTAAAGAAATAGTAAAAGAGGATAAGCCAATACCAAAAGATAACACTCCCACATTTACACTTGAAGGAGGGAAAATAGTGATTGCGCCTTTGACCATTAATAGTCCTTCCACTCCAAAATTCAACACATATTCATGTAGTTCGTGCCCCAGTATCTTCACAACATATCGATCTTTGAAGGAGCATGAAAAATCCCTACACAACATCATAATATACCAATGTAGGTTTTGCAGCAAAACATACAACTCTCAACAATACTTAGATGTACATTATGTGAATAACCATTCAAAAAAGAGATGCAGATATTGTCATGAATTATTTGATACTAAAGAATTAAATGGCCATCTGAGAAGTGTACATAAAGAACAAGTGAACTTCTGCCAATATTGTGATTTGGTTTATCACACACCAGAACAACTGGAGACTCACTTCAAATCTGCTCATTTAGTGAGTCAAGCTCAGACCAATGATAATAACAAAACTCAGTGTGTCATGTGCCTTAGGAATTTTAATGATTCAGAAATCAAAATGCACAAATGCAAGTTTTCTTGTCTGGAGTGTCTATCAGCCCCATGTGTACATTACAGCTACCTTATGTCCTACAGGGAACAGATATTGAACCATATTACCAAAATTAGATGTATAGACTGTGACTTCACTACAAAGCGAAAGGAACATTTGATAGGTCACGTCAACCGGGAGCATTTAGATCACCATCCCTTCACATGCCACGACTGCGGAACACAATTTTACACAAAGTTGAGCATGAAAACTCATATCATGCAGTTTCACCAAGACTTGAAATGCCAGTACTGTGACTATGAATTTAAGAATTTACAGTTACTGCAGAATCACAGAGACCTCTGCAAAGGTATAACAAGATCAGTACCCTGTGAACTTTGTGTGGCATCATTTGATACAGATTCAGAACTAAAAAACCATATGAGCCTTAACCATAGTGAAATTGTATACCCTTGTACATTATGCAAGAAGGAATTTACAAATGAATCTACACTAAAAGATCATCACATCAAAATTCATAGTGGTATCCAGTACAAGAAGCGAAGAAAATTCATTGAGTGCACTCTTTGTGATATAACTTTTAACAATGTCAAAGAAATgctgaaacatgaagagttacaTGACACAAATGTGATGTACCCTTGCAAAGTGTGCCCAAAAAGTTTTTCTAGTTTGAGACAAATGTATGTTCACAAGCAAAAACACTATAGCCAAAGGACTAAATGCCAAAATTGTGGCAAATCTGTTGGTACAGCATACTTAAGTCAACACATGGTAGTCTGTGCTAGTTTCAAAACTAACAGGCCATTTTCATGTGATAAATGTGGTAAAGAATTCAATGTAGAATCAGCGCTAATGACCCACCTCAGATTCCATGCTAAGCCTTACGTCCCATGTGAGTACTGTGAAAAACTAATAAAAGTAACATCAATGAAACATCACATTGAAACGAAACATACCATTGGGTCAGAAAGTAAGGCTACTTTTGAATGTGACCTTTGCAATTACACTGCGAAGAAGAGGGTTGATTACGAAAACCACATGAATAAGTTGCATTTAAAGATAAAGCCATTTGTTTGTCAAGTATGTAGTAAAGCATTTTGCGGAAAAGCTAGATTGGATGAGCATGCAAAGACGCATACAGACAATAATGTCTGCTTTTGCTCATTCTGTGGCAAAAAGTTTGCTAACAAAGTGTGTCTTAAAATGCATACAAGAAAACATACTGGTGAAAAGCCGTATGAATGCAACATATGTCATGAGAAGTTCCGCTCATCTAGTATTATGAAAACACATAGACTTAAAAAACATCAGGATAAAACAATACAGTGTCCATTGTGTGATTCAATGTATCATTTGGTCGCTGAGATGCGGTTCCAtgtcaaaaaaaatacactGGAAGAGCCCAGACCCATTTGA
- Protein Sequence
- MDDTGTSIDQLNREWLRNKLSTLWTAPQHCGLCLETTGELYPLNAEFLLSKWIHTKSLKNIINTVLVCDVQDFASSEMICKQCVDNAIQSYVFTENTKRIFNLIKGCVNDLLSKVTDLNNELEGSQTENYTNSNVMIVVEYDNEVTDNVDKAPQLYNNRSMKSLPQKELNSKKLDGKVVPQNNESKPTQRVVKYPRTKEIVKEDKPIPKDNTPTFTLEGGKIVIAPLTINSPSTPKFNTYSCSSCPSIFTTYRSLKEHEKSLHNIIIYQCRFCSKTYNSQQYLDVHYVNNHSKKRCRYCHELFDTKELNGHLRSVHKEQVNFCQYCDLVYHTPEQLETHFKSAHLVSQAQTNDNNKTQCVMCLRNFNDSEIKMHKCKFSCLECLSAPCVHYSYLMSYREQILNHITKIRCIDCDFTTKRKEHLIGHVNREHLDHHPFTCHDCGTQFYTKLSMKTHIMQFHQDLKCQYCDYEFKNLQLLQNHRDLCKGITRSVPCELCVASFDTDSELKNHMSLNHSEIVYPCTLCKKEFTNESTLKDHHIKIHSGIQYKKRRKFIECTLCDITFNNVKEMLKHEELHDTNVMYPCKVCPKSFSSLRQMYVHKQKHYSQRTKCQNCGKSVGTAYLSQHMVVCASFKTNRPFSCDKCGKEFNVESALMTHLRFHAKPYVPCEYCEKLIKVTSMKHHIETKHTIGSESKATFECDLCNYTAKKRVDYENHMNKLHLKIKPFVCQVCSKAFCGKARLDEHAKTHTDNNVCFCSFCGKKFANKVCLKMHTRKHTGEKPYECNICHEKFRSSSIMKTHRLKKHQDKTIQCPLCDSMYHLVAEMRFHVKKNTLEEPRPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634776;
- 90% Identity
- iTF_00634776;
- 80% Identity
- -