Egri005999.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr29:679-24881[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.7e-06 9.6e-05 22.7 0.6 2 23 95 117 94 117 0.96 2 21 0.00039 0.022 15.2 1.1 1 23 123 146 123 146 0.95 3 21 0.00071 0.04 14.4 1.5 1 23 153 176 153 176 0.97 4 21 3.4e-05 0.0019 18.6 2.8 2 23 182 204 182 204 0.96 5 21 0.00054 0.03 14.8 3.4 1 23 220 243 220 243 0.96 6 21 0.0088 0.49 11.0 0.5 5 23 256 275 253 275 0.92 7 21 2.3e-06 0.00013 22.3 0.7 2 23 281 303 281 303 0.97 8 21 0.061 3.4 8.3 2.7 2 23 311 333 310 333 0.91 9 21 6.5e-07 3.7e-05 24.0 1.1 3 23 530 551 529 551 0.94 10 21 0.014 0.78 10.4 0.5 2 23 558 580 557 580 0.96 11 21 0.0072 0.41 11.2 2.2 2 23 587 609 586 609 0.93 12 21 1.4 80 4.0 0.2 2 13 617 628 616 630 0.88 13 21 0.00039 0.022 15.2 1.1 1 23 633 656 633 656 0.95 14 21 0.00071 0.04 14.4 1.5 1 23 663 686 663 686 0.97 15 21 3.4e-05 0.0019 18.6 2.8 2 23 692 714 692 714 0.96 16 21 0.00041 0.023 15.2 1.4 2 23 731 753 730 753 0.96 17 21 0.0088 0.49 11.0 0.5 5 23 766 785 763 785 0.92 18 21 2.3e-06 0.00013 22.3 0.7 2 23 791 813 791 813 0.97 19 21 0.061 3.4 8.3 2.7 2 23 821 843 820 843 0.91 20 21 1.8e-05 0.001 19.4 2.5 1 23 848 870 848 870 0.98 21 21 0.014 0.79 10.3 0.6 1 23 876 899 876 899 0.96
Sequence Information
- Coding Sequence
- ATGGAAGAAGTATACATTAAGgcggaaaatataaaaaatgagcCAGAAGATGATACTGAACATACAGTATCTGATATACGTCCTCCACATATGAAACAAGAACAGGAGATAAATGTGGACAGCGAAAATCAATTGTATTCTCAAAGTTACAATCATAACTTAAATACTGCTCAGCATAGTGAAGGACCGTATTTAAGAAAGAGTGAAAGCACAGAAAAATTAGAAACCCTAAATGCAGATCCAGAAAATTTTCCAATGCTAAATGAGCCTGAAGAACAAGTCACGTGCAAAGTTTGCTCGAAAACGTTCAAGGGACCATACAATTTGAAAATTCACATGAGGTACGTGCACCCAGCTGGTGAGCCGCACCCCTGCCCATTCTGCTACAAAACCTTCAAAGTAGAGATGCTTCTCCAGCGCCACCTGAAGTGGGCGCACCCTGGCGACGGCATGACCTACAAGTGCCAAGAGTGCCACAAGATCCTCCCCTCTCTCGACGGGTTCAAAACACACATGAAGAACGTTCACCTCTTCGACCGCGCCACCTGTGACCTCTGCAAACGGACTTTCAAAACAAAGAAATCTCTCGAACGCCATCTCAAAAACATTCACAATGGAAAACCCCCTGAAAAGATTGAAGAATACGTCCCAAAAGAACATACGTGTCAATTTTGCGAGCGATCTTTCAATAACAGTACGTCTCTGTTCTGGCATATAGAACGGTTCCACGCTCAGTTGCAGAAGTTACCGAATGATTTATGTATTATCTGTAACAAAGAATTTTCGGACTATGCTGCTTTGCATCGACACCTAACATCAGTGCATTCTTTAGAAACGGCGACCTGTAAAATATGTCAAAAGGAATTCAAATCTCCGATAAATCTGCAGAATCATATAAGAATCACGCACGCTCCCCCAGAAGCGACGCAGAAATGTGACATATGTCAAAAAACGTTCAAATGTCCGCTGCATTTGCGGATGCACGTTTTGGCAGTTCACGATGGTGGGGAGTATCCATtgaacaaacacaaaaaattagTTCACAACGGAAAAACCTGTCCAACGATGGAAGAAGTATACATTAAGtcggaaaatataaaaaatgagcCAGAAGATGATACTGAACATACAGTATCTGATATACGTCCTCCACATATGAAACAAGAACAGGAGATAAATGTGGACAGTGAAAATCAATTGTACTCTCAAAGTTACAATCATAACTTGAATACTGCTCAGCATAGTGAAGGACCGTATTTAAGAAAGAGTGAAAGCACAGAAAAATTAGAAACTCTAAATGCAGATCCAGAAAATTTTCCAACACTAAATGTAAAACCAGAAAATTTTCCAACGCCCATAGACAACACAAATACTTTTTCAGATCACAATCTGGGTACTGAgaatttttcacaaaacacagaaaattgtttgaaacaaaattatactGATACGTATTTGACTCAAAAAGGATTTGTCGAAGCGAATTTCCGTCAAATACAGACAGGAATACCACACAATTTAAATGATTCTCAGAGTGCAAACATTCCAGAAAAAGTATACGAGAATGGAAAGATAAATAGGCCAATGTGTGTTGAATGCGGAAAGTCTTTTAAGAACCGGTCAAATTTGAAAAATCATATTAAATTTGTGCATGCGGAAGACCAAACAGTGGAATGCAAAGAATGCATGCGTAGCTTCAAATCTATACTGTACCTACGGTCTCACATGAGCTCGGTCCACGCCAAGACGGAAGTAGTGTATTGCCCGCACTGCAACAaagcatttttaaataaaaagaagttAAGCAATCATATTTATTACACCCACAGGGAGCCTGAAGAACAAGTCACGTGCAAAGTTTGCTCGAAAACGTACGTGCACCCAGCTGGTGAGCCGCACCCCTGCCCATTCTGCTACAAAACCTTCAAAGTGGAGATGCTTCTCCAGCGCCACCTGAAGTGGGCGCACCCGGGCGACGGCATGACTTACAAGTGCCAAGAGTGCCACAAGATCCTCCCCTCTCTCGACGGGTTCAAAACACACATGAAGAACGTTCACCTCTTCGACCGCGCCACCTGTGACCTCTGCAAACGGACTTTCAAAACAAAGAAATCTCTCGAACGCCATCTCAAAAACATTCACAATGGAAAACCCCCTGAAAAGATTGAAGAATACGTCCCAAAAGAACAGACGTGTCAATTTTGCGAGCGATCTTTCAATAACAGTACGTCTCTGTTCTGGCATATAGAACGGTTCCACGCTCAGTTGCAGAAGTTACCGAATGATTTATGTATTATCTGTAACAAAGAATTTTCGGACTATGCTGCTTTGCATCGACACCTAACATCAGTGCATTCTTTAGAAACGGCGACCTGTAAAATATGTCAAAAGGAATTCAAATCTCCGATAAATCTGCAGAATCATATAAGAATCACGCATGCTCCCCCAGAAGCGACGCAGAAATGTGACATATGTCAAAAAACGTTCAAATGTCCGCTGCATTTGCGGATGCACGTTTTGGCAGTTCACGATGGCGGCGAGTATCCGTGTGACATCTGTCAAAAAACGTTCACGTCTACTAAATATTTGAACAACCACAAGAAATCGCATTCCGACATTAGAGACTTCCAATGCgacatttgtttgaaaatgtataaaaatataaatgcagtgaacaaacacaaaaaattagTTCACAACGGAGTGAAATGTACTATATGCAATATAAAACAGCCGAACATAGAAGACCATATGAGGAAGTGTCATCCTGACGTTGCTATAAATTTAACCATAGACACAGCAAAACCTAGTAAACCTGAATCCGTCAAACGCAAAAGAAGAACAGCGGATCCTAATAAACGTAAAAAGAAGATGGATGATGCAAAAAACATTGAGTCAGAGCATAATAATGCAAATATGCACTCTATAGAAAATATTAATGCGTCTTTGCATTCTGAAGAAAGTATTAATGCGTTTATGCACTTTGCAGAAAATGAGAATGCGTTTATGCACTTTGCTCAGAATATGAATACTATGAATTCTAgtgaagataataatattaatacggataattttaatgaaacgggatgtaaattaaatgatttaagTGTTGTTAAAAGTGAAATACAGGTTGATGAAATAGTGTGTAGAGtttgtgaaaagaaaattgatAGTTCAGAATACGATGAGCATGCGGCGAGTTGTGAGCGACCGCCGATACTGGAGTCTCACCGCGCGGTGCACGCGGCGCGCGTGCGTACCGAGCGCGCTGCGCTGCGAGAACGCGCGGCCGCAGTCCGCGCACGCGAACGGCTTCTCGCCGGTGTGCGTGCGGATGTGagagagagagagagagagatacacTTCGCTATGGGTGCGAAAGAGACTCACCACCCGAACGCCTTCTTCACGGGAACTGAGCCAGTCGGGCAGTCGCTCAACGACCGCCGCGGGAGAAGGACGTCGCTCGAGCGCTGTTGA
- Protein Sequence
- MEEVYIKAENIKNEPEDDTEHTVSDIRPPHMKQEQEINVDSENQLYSQSYNHNLNTAQHSEGPYLRKSESTEKLETLNADPENFPMLNEPEEQVTCKVCSKTFKGPYNLKIHMRYVHPAGEPHPCPFCYKTFKVEMLLQRHLKWAHPGDGMTYKCQECHKILPSLDGFKTHMKNVHLFDRATCDLCKRTFKTKKSLERHLKNIHNGKPPEKIEEYVPKEHTCQFCERSFNNSTSLFWHIERFHAQLQKLPNDLCIICNKEFSDYAALHRHLTSVHSLETATCKICQKEFKSPINLQNHIRITHAPPEATQKCDICQKTFKCPLHLRMHVLAVHDGGEYPLNKHKKLVHNGKTCPTMEEVYIKSENIKNEPEDDTEHTVSDIRPPHMKQEQEINVDSENQLYSQSYNHNLNTAQHSEGPYLRKSESTEKLETLNADPENFPTLNVKPENFPTPIDNTNTFSDHNLGTENFSQNTENCLKQNYTDTYLTQKGFVEANFRQIQTGIPHNLNDSQSANIPEKVYENGKINRPMCVECGKSFKNRSNLKNHIKFVHAEDQTVECKECMRSFKSILYLRSHMSSVHAKTEVVYCPHCNKAFLNKKKLSNHIYYTHREPEEQVTCKVCSKTYVHPAGEPHPCPFCYKTFKVEMLLQRHLKWAHPGDGMTYKCQECHKILPSLDGFKTHMKNVHLFDRATCDLCKRTFKTKKSLERHLKNIHNGKPPEKIEEYVPKEQTCQFCERSFNNSTSLFWHIERFHAQLQKLPNDLCIICNKEFSDYAALHRHLTSVHSLETATCKICQKEFKSPINLQNHIRITHAPPEATQKCDICQKTFKCPLHLRMHVLAVHDGGEYPCDICQKTFTSTKYLNNHKKSHSDIRDFQCDICLKMYKNINAVNKHKKLVHNGVKCTICNIKQPNIEDHMRKCHPDVAINLTIDTAKPSKPESVKRKRRTADPNKRKKKMDDAKNIESEHNNANMHSIENINASLHSEESINAFMHFAENENAFMHFAQNMNTMNSSEDNNINTDNFNETGCKLNDLSVVKSEIQVDEIVCRVCEKKIDSSEYDEHAASCERPPILESHRAVHAARVRTERAALRERAAAVRARERLLAGVRADVREREREIHFAMGAKETHHPNAFFTGTEPVGQSLNDRRGRRTSLERC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00635938;
- 90% Identity
- iTF_00635938;
- 80% Identity
- iTF_00635938;