Basic Information

Insect: Ectropis grisescens
Gene Symbol: -
Assembly: GCA_017562165.1
Location: chr03:12801561-12825585[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00012 0.0066 16.9 0.1 3 23 328 348 327 348 0.97

2 17 1.1e-06 6e-05 23.3 1.2 1 23 354 376 354 376 0.99

3 17 6.6e-06 0.00037 20.8 2.7 1 23 382 404 382 404 0.99

4 17 4.4e-06 0.00025 21.4 2.6 1 23 419 441 419 441 0.98

5 17 9.9e-05 0.0056 17.1 0.6 1 23 456 478 456 478 0.98

6 17 6.1e-05 0.0034 17.8 3.1 1 23 493 515 493 515 0.98

7 17 4.2e-07 2.4e-05 24.6 1.5 1 23 530 552 530 552 0.99

8 17 0.00019 0.011 16.2 2.8 1 23 558 580 558 580 0.98

9 17 0.043 2.4 8.8 1.8 1 23 587 609 587 609 0.98

10 17 7.2e-07 4e-05 23.8 2.3 1 23 615 637 615 637 0.99

11 17 0.3 17 6.1 1.1 1 23 644 666 644 666 0.98

12 17 0.29 17 6.2 0.4 1 13 672 684 672 695 0.88

13 17 0.00023 0.013 15.9 0.4 1 23 706 728 706 728 0.99

14 17 3.2e-06 0.00018 21.8 1.9 1 23 734 756 734 756 0.98

15 17 0.0024 0.13 12.8 0.3 1 20 762 781 762 784 0.93

16 17 4.6e-05 0.0026 18.2 1.4 2 23 791 812 790 812 0.96

17 17 4.2e-06 0.00023 21.4 1.4 1 23 818 841 818 841 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00012	0.0066	16.9	0.1	3	23	328	348	327	348	0.97
2	17	1.1e-06	6e-05	23.3	1.2	1	23	354	376	354	376	0.99
3	17	6.6e-06	0.00037	20.8	2.7	1	23	382	404	382	404	0.99
4	17	4.4e-06	0.00025	21.4	2.6	1	23	419	441	419	441	0.98
5	17	9.9e-05	0.0056	17.1	0.6	1	23	456	478	456	478	0.98
6	17	6.1e-05	0.0034	17.8	3.1	1	23	493	515	493	515	0.98
7	17	4.2e-07	2.4e-05	24.6	1.5	1	23	530	552	530	552	0.99
8	17	0.00019	0.011	16.2	2.8	1	23	558	580	558	580	0.98
9	17	0.043	2.4	8.8	1.8	1	23	587	609	587	609	0.98
10	17	7.2e-07	4e-05	23.8	2.3	1	23	615	637	615	637	0.99
11	17	0.3	17	6.1	1.1	1	23	644	666	644	666	0.98
12	17	0.29	17	6.2	0.4	1	13	672	684	672	695	0.88
13	17	0.00023	0.013	15.9	0.4	1	23	706	728	706	728	0.99
14	17	3.2e-06	0.00018	21.8	1.9	1	23	734	756	734	756	0.98
15	17	0.0024	0.13	12.8	0.3	1	20	762	781	762	784	0.93
16	17	4.6e-05	0.0026	18.2	1.4	2	23	791	812	790	812	0.96
17	17	4.2e-06	0.00023	21.4	1.4	1	23	818	841	818	841	0.97

Sequence Information

Coding Sequence: ATGCCTATGACCTCAACGGCCAAGGGCAAGGGGGTGGGCAAGAAGAGCAAGGCGCCGGCAGAGCAGTCTGTGGGGCCCGCTGCGGCTGGGCCGCAGCCTGGCCCCTCCACCGCCGCCGACACCGCACCGCCGCCGGTCGCGACACCGGCGGTCACACTACCACCCACGAGCGCCGCGGAGGTCGCGCCGACATGCGCGGACCAGCGCCTGTCGCGCGCCCCGGACAGGCGCCGCGAACAAGAAGAGCCCAGGCCGCGGCGGGGAGGCTACCAACCCTTCCCCGACCCGCGGCTGGGGCAACAGGCTCAGCAGCCGCCCGGTTTCGGGCCCCCGGGCTGGGGTCCCCCCAGCAACGAACAATTCTTCCCACGCCCACCCGTGGGACTACCACCATCGCACGGCCCACTCGGAACCCAGGTCATGTGTTCCTTTGCATATGAGGCGGGAGTTGAATATGGAGGAACATCAAAAGCGCCATTAGTTTCCCAGCACATTGGGGCGTGGGCGTCGGGGGGTATGGCACGGGGCGTGGGGGTCCCCGTGCCACCCCCCGGCGACCTACTCGCCACTATATCTATGTTTGAACAGCAAATCAAAGCTGAACCGAtgagTTTCTACTCGTCGCACCAGCATGTACATAGCGGCCCCCCAACAATAGTTCGGTCAGATTCCTCTCACCCCATCATCAACATGAACCCGCACCACCCGTCGCTGTCGCATATGTCACACCAAGAGGACTCGAAGGACAGCTTAATACAACAACAAGTACAACACCAAGATCTCATGGAACAACACCATCAACAGGAGATGCACCAACAAGATGATGAGTTGAGCTTTAAAGGAATGGAGGATGAAGGCGTTGATATGGATATGGATGGAAGACAGTGTTCACAGGGTATGGGTGTTGATATGGGATCAGTTCAAACTAAAATGGAAATACCGAATGGTGGACCAAATACACCTCGTTCAAAGCCACAGGCCTGTAAGgTTTGCGGTAAAGTCCTTTCGTCCGCTTCATCATATTACGTCCACATGAAGCTTCATTCAGGAAACAAGCCCTTCCAATGCACAGTTTGCGACGCAGCTTTTTGCCGTAAGCCGTACTTAGAAGTGCATATGCGCACGCACACAGGCGAAAGACCTTTCCAATGCGATCTGTGTCTAAAACGCTTCACACAGAAGTCCAGCCTTAACACACACAAACGTGTGCACACAGATGAGCACATGCGAGCGTTGATGGTGAAGGACCGGCCCTACAAGTGTGAGCTCTGTCAGATGCGGTTCACGCAGAGCTCCAGCCTCAACCGCCACAAGAAAATACACACGGAGGAACACAGACGCGCGCTGCTGGCTCAGGATCGGCCCTACCAGTGCGGCATCTGCTATGTGCGATTCACCCAGAAATCGAGTCTGGGCCGGCACGGAAAAATACACACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGACGCCATGGGAAAATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCCTATCAGTGCGACATCTGTGACAAGCGGTTCACGCAGAAGTCGAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCGGCCGCCTTCACCTGCAAGCAATACCTGGAGATTCACACGCGCACCCACACCGGCGAGCGACCCTATCAGTGTGACATCTGCCTGAAGCGCTTCACGCAGAAATCCAGTCTCAACATACACAAGCGGACGCACTCAGTTCAGGGACGGCCATTCCAGTGCTTGGCGTGTCCCGCTGCCTTCACCTGCAAGCAGTACCTCGAGATCCATAACCGCACGCACACCGGCGAGCGCCCCTATCAATGTGATGTATGTCTCAAGAGATTCGCGCAAAAAGTCTACTCTCAACATACACAAACGAACGCACACAGGTCAGTGCAACTTGTGCAAGGGCGGCCCTACCAGTGCGGAGAGTGCCCAGCCGCGTTCACTTGCAAGCCGTACCTGGAGATTCACATGCGCACGCACACCGGCGAACGCCCTTTCGAGTGCGATGTCTGTTACAAACGATTTACACAGAAATCAACGCTCAACATCCACAAAAGAATTCATACCGGTGAACGTCCTTATGCTTGTGATATCTGTCAGAAACGTTTTGCTGTGAAGAGTTACGTCACGGCGCACAGatgGTCTCACGTAGCAGACAAGCCACTGAACTGTGACCGGTGTTCGATGACGTTCACCTCGAAATCGCAGTTCGCTCTTCACATCCGCACACACTCCACGGGGCCTTGCTATGAGTGCAGTGTGTGCGGACGCACCTTCGTGAGGGACAGCTATCTCATACGACACCACAACCGCGTTCACCGCGAGACGAACCACAGCCTGTCTGGGAACAGTATCTCCAACATCAATAGCGTTGCGACCAACACCAACTCTAACAACGGCAACTATGATTCACCCGGTGTCTGCGACTTGAGCTTCGTACCGATGGTAAATCGTTACATGACGTCGCAAGGCACGCAGGTGTCGATGCAGGATTCGCAGAGCAAGATGTCAGCAATGTCGCCGCAATCTATCGCATCTATTTCATCGCCTCCGCCCCCGCATACCCCAACGCCTCAGCCCCAGCAAATGTCGAGTCAGATGCATCTTACAGACTGA
Protein Sequence: MPMTSTAKGKGVGKKSKAPAEQSVGPAAAGPQPGPSTAADTAPPPVATPAVTLPPTSAAEVAPTCADQRLSRAPDRRREQEEPRPRRGGYQPFPDPRLGQQAQQPPGFGPPGWGPPSNEQFFPRPPVGLPPSHGPLGTQVMCSFAYEAGVEYGGTSKAPLVSQHIGAWASGGMARGVGVPVPPPGDLLATISMFEQQIKAEPMSFYSSHQHVHSGPPTIVRSDSSHPIINMNPHHPSLSHMSHQEDSKDSLIQQQVQHQDLMEQHHQQEMHQQDDELSFKGMEDEGVDMDMDGRQCSQGMGVDMGSVQTKMEIPNGGPNTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKDRPYKCELCQMRFTQSSSLNRHKKIHTEEHRRALLAQDRPYQCGICYVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLACPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKVYSQHTQTNAHRSVQLVQGRPYQCGECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSTGPCYECSVCGRTFVRDSYLIRHHNRVHRETNHSLSGNSISNINSVATNTNSNNGNYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDSQSKMSAMSPQSIASISSPPPPHTPTPQPQQMSSQMHLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00820300;
90% Identity: -
80% Identity: -