Egri009245.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- clz9
- Assembly
- GCA_017562165.1
- Location
- chr16:22678111-22679910[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.5e-10 1.4e-07 31.1 0.0 2 41 17 57 16 59 0.92 2 2 6.4 2e+03 -1.4 0.0 21 30 363 372 362 372 0.88
Sequence Information
- Coding Sequence
- aTGGTGCGGACATATGTACCAAAAAACACAACTAGACCAGTTGTGAATGAAGAATCTATGCAGTCAGCAATACAGGATGTTGTGCAAGGAGTATTGTCATACAGAAAAGCTGCGGACAAGTACAATTTGAAATTGTCAACATTAGAAAgccgagtaaaaaaatacaagaatagCAATGATGATGAAGGGTCAAGCAACCGTACATTTGACTCTAAATATACAAGTTTCCAAGTCTTTTCTATTGAAGAAGAAAAGCTGCTAAATGattatattatcaaatgttGTAAGATGCATTATGGACTTACGACGATTCAAACAAGAAAGCTAGCATATGAGTACGCCAAAGCTTTGAGTTTGAAATATCCAGCAAAGTGGGAAGAAACTAAGATGGCTGGGAAAGAGTGGATGTATGGTTTTCGCAGAAGAAACCCGGAACTTAGTTTACGCAAACCCGAAAACACTAGTGCAGCTAGGTCTTTTGCGTTTAACAAAACTTCGGTTACCGAGTTTTATACCAACTTGAAGACAGTGTTGGAGCGACATCCATTAACTGCTGACAGAATCTTTAATTTCGACGAATCAGGTGTATCTACCGTTCTAGCTACTCCCAAAGTCTTGGCTCCAAGATGTCAAAAACAAGTCGGGCAAATTGTATCAGCTGAAAGAGGCGAGCTCGTAACTTTTGGTGGTATTATATCTGCCAGTGGAAATACCATTCCTCCACTATTTGTGTTCCCACGCGTTCATTATAAAGACAATTTCCTCGAAGGAGCACCCGAAGGAAGTCTCGGCGCTGCAAATAAAAGTGGCTGGATAAATAGCGATATATTCGTGTctgttttaaaacataatatccaGAAGCATACACTCTGCACTAATGAAAACCCCATATTATTGCTGTGTGACAATCATGAAAGCCATGTTTCTCTCGAAGCCATCAACTACGCCAAAGAAAATGGTATAATTTACCTATCTTTTCCACCGCACACATCTCACCGTCTACAACCACTTGATGTAGGAATCTTTGGACCATTTAAATCAAAGTTGAAAATTGCTTTCAATAATTGGCATACAATGAACCCAGGCAAAGCAATGACTATTTACAATATTCCAAAGCTTGTGAAAATTGCGTATTTAGAATCATTTACGGCAAAAAATATCACAAGCGGGTTTAACAAACCCGGGATATGGCCTCTTAACGAATTAGCCTTCAGTGACGAAGATTTTGCTCCAACTGAGGTTTATACATCCGGTAACGTAGAAAATGTTCCTCCTACTCAAAACATCGTTGAAGATTTGTCAGCACCTACTCCTGAGCCAGTTTTCTCTGATATCTGCCAGCCTTCTACTTCAGGAACACAAGATTTCTTGGAGGTTCCGTCAGAATCTACAGAACAAACTATTAACTCTCCATTGATAACTCATGATAATGAACTACACACGTTTAATTTAGATGCTTGTGAACCAGATGCTTTGAATAATTCACCAATCCATCAAATAGTAGCTCCTTTGAAGACTGTTTTGACACCAGAGGCAATTCGACCATATCCGACTGTTGTAAGaagtaataaaacaaacaaagggCGACGGCCAGGAAAATCTCGTATTTATACTGACACACCCGAAAAAAAGCTAATTGAAGAGAAACACAATCAAAAGCAACTGAAAAAGCTAGAACAGGAAAGAAGGTGTAGGGCTAGACAAATGAAACGTAGTTTGgttgactttaatttaaaaacgaagAACAAGAAAGCTAAAACACAGAAAGTGATGAATCTGATTGCGATGGATCTGATATAA
- Protein Sequence
- MVRTYVPKNTTRPVVNEESMQSAIQDVVQGVLSYRKAADKYNLKLSTLESRVKKYKNSNDDEGSSNRTFDSKYTSFQVFSIEEEKLLNDYIIKCCKMHYGLTTIQTRKLAYEYAKALSLKYPAKWEETKMAGKEWMYGFRRRNPELSLRKPENTSAARSFAFNKTSVTEFYTNLKTVLERHPLTADRIFNFDESGVSTVLATPKVLAPRCQKQVGQIVSAERGELVTFGGIISASGNTIPPLFVFPRVHYKDNFLEGAPEGSLGAANKSGWINSDIFVSVLKHNIQKHTLCTNENPILLLCDNHESHVSLEAINYAKENGIIYLSFPPHTSHRLQPLDVGIFGPFKSKLKIAFNNWHTMNPGKAMTIYNIPKLVKIAYLESFTAKNITSGFNKPGIWPLNELAFSDEDFAPTEVYTSGNVENVPPTQNIVEDLSAPTPEPVFSDICQPSTSGTQDFLEVPSESTEQTINSPLITHDNELHTFNLDACEPDALNNSPIHQIVAPLKTVLTPEAIRPYPTVVRSNKTNKGRRPGKSRIYTDTPEKKLIEEKHNQKQLKKLEQERRCRARQMKRSLVDFNLKTKNKKAKTQKVMNLIAMDLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034477;
- 90% Identity
- iTF_00726281; iTF_00635334; iTF_00634295;
- 80% Identity
- -