Egri006152.1
Basic Information
- Insect
- Ectropis grisescens
- Gene Symbol
- -
- Assembly
- GCA_017562165.1
- Location
- chr11:27522273-27534856[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-10 7.5e-08 32.0 0.0 4 38 171 206 168 211 0.89 2 4 2.2e-11 6.8e-09 35.3 0.2 3 39 224 260 222 263 0.92 3 4 4.6e-15 1.4e-12 47.1 0.2 2 45 278 322 277 322 0.96 4 4 1.3e-17 4e-15 55.3 0.0 1 41 329 370 329 374 0.94
Sequence Information
- Coding Sequence
- ATGCCCAGAAACGGACCGTTTCAAGTGAAATGCGAACCATCGTCTGACGAAGAAGATAACTGTCCGCAACTATCAGACATTTTTCTTTGTAAGGCTACGGAATTTCATTGTTCGAAAACAAACACGGTTGGGCAAAATGAGGAAAGATCTTCAGCGGATTTGTTGCAGCATTTTCAGTCCGCCGGGCTGGAGGAgctggcgccggcgccggcgggccCGGCCGCCACGCCGGTGCTGGTGAAACAAGAGCCGGGCACGCTGCCGGCGCTCGAGACCCTCGCCAGCCTCGACTCCGCGCCTCACAGCATGGGTGGGTCGATATTGGAAAGGCACAACATGGCGATGTTAAACTCAGCAGAAGAACTAGATTCGTCAAGTTTCACCCCGCTGCTCATCAAAGACGAGCCTTTATCAGAAGGAGAGCTCCAGCCGGCGAGCGGGGACGAGGCCGGCGACGGCGGCCGGGGGGCGGAGCACCCGCGCGGGAGCCCTAAGAGCTGGACGCAGCGAGACATGGAGCACGCGCTTGACGCGCTGCGGAACCACCACATGAGCCTCACCAAGGCGTCGGCCCGGTTCGGCATCCCGTCCACGACGCTGTGGCAGCGCGCGCACCGCGCCGGGATCGACACGCCGAAGAAGGAGGGCGGCGCCAAGTCCTGGGGCGACGCCGACCTGCGCGCCGCGCTGCACGCGCTGCGCGCCGGGCACATCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCAAGCAGCACGTTGTACAAGATCGCACGTCGCGAGGGGATCCGCCTGGCGGCGCCGTTCAACGCCGCTCCCGTGGCGTGGAGGCGCGGTGACCTCACGCGCGCGCTCGCCGCCatccgcgccggcgccgcgtccGTGCAGCGGGCCGCGGCGCAGTACGGCATACCCACAGGTACTCTGTACGGGCGCTGCAAGAGGGAAGGCATCGAGCTGTCCCGGTCCAACCCCACGCCCTGGTCCGAGGACGCCATGGGAGAGGCTCTTGAAGCAGTCAGAGTCGGACAAATGTCAATAAACCAAGCAGCCATTCACTACAATCTGCCCTATTCATCGCTTTACGGGCGATTCAAGAGATGCAAATATTTGGTGGCTCAGGCACAGCCAGCGACACAGCAAGAGGTCCTCAATATATCCGAAACGGCGGGCCCTCGACAACATCTATCGTACTATCAAGAACCGCACGTGACTGAATCGGACCACCTATCGAACCAATACTCGCAGAACGGCTTCGTTCCGCACACATCGCCGCTCAACAATGTGGTGATACAGGACCCGTTTGCTGGACAAGCGATGTATTACAACCAAGGGTTTAGCAGCATCGCGACGAGCTGA
- Protein Sequence
- MPRNGPFQVKCEPSSDEEDNCPQLSDIFLCKATEFHCSKTNTVGQNEERSSADLLQHFQSAGLEELAPAPAGPAATPVLVKQEPGTLPALETLASLDSAPHSMGGSILERHNMAMLNSAEELDSSSFTPLLIKDEPLSEGELQPASGDEAGDGGRGAEHPRGSPKSWTQRDMEHALDALRNHHMSLTKASARFGIPSTTLWQRAHRAGIDTPKKEGGAKSWGDADLRAALHALRAGHISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLTRALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLVAQAQPATQQEVLNISETAGPRQHLSYYQEPHVTESDHLSNQYSQNGFVPHTSPLNNVVIQDPFAGQAMYYNQGFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634235;
- 90% Identity
- iTF_00634235;
- 80% Identity
- -