Ecre023447.1
Basic Information
- Insect
- Ectropis crepuscularia
- Gene Symbol
- -
- Assembly
- GCA_963693475.1
- Location
- OY856351.1:9661389-9664087[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00083 22 6.8 0.1 21 52 34 65 24 67 0.92 2 4 0.00013 3.3 9.4 2.2 22 51 63 92 57 95 0.90 3 4 1.5e-05 0.4 12.3 0.1 16 46 145 175 140 177 0.82 4 4 0.00048 13 7.5 0.1 21 46 178 203 172 208 0.88
Sequence Information
- Coding Sequence
- ATGgcactCTTAAAATCTACTCTAATCAAAATACCAAAGGACAGCGAAGTCAAGTACAAAAGAAGGAATACGAGATTGAAGTTACCGAAGAAACCCAAAATCAACCAACCCAGACTTTGCGACTTATGCGGCGACACATTTAAAACTCAATATAAACTTAATGTACATAGAAAAAAGATTCATTTTAGTAAACCCACGAAATGTACTCAATGCTCACGGATTTGTTCTTCACAGAATAATTTGCTTCGTCATATTAAAAGGAGACATGGTGCGAAGGAGTTTATTTGTGCTACCTGTGGCAAGGAGTTTGCTTTTAAAGGGGAGCTTACTGTCCATGTGAACAAAGTTCACAAAGACAGACCCAAGAAGATATTTCAGTGTAAATACTGTGATAAGATATTTACATCTCAGAAAGGGGCAGTTATACATGAGAGGTCAGCACATACAGGGGAACGGCCAGCGGAATGCCCGATATGTTTGAAGGGTTTCTTCCACGTGGAGTACTTAAAGGAGCACATGAGACTTCATACAGGAGAGACGCCGTTCAAGTGTCCAGTCTGCGGCCGAGGGTACGCGCAGTtggggaacatgaagagtcatctGAGGATACATCGGGTTTGTGACGTGGACGCATCGACGCTGAGCAAGATGAAACCTAACTATATAAAACTGTTGaagatataa
- Protein Sequence
- MALLKSTLIKIPKDSEVKYKRRNTRLKLPKKPKINQPRLCDLCGDTFKTQYKLNVHRKKIHFSKPTKCTQCSRICSSQNNLLRHIKRRHGAKEFICATCGKEFAFKGELTVHVNKVHKDRPKKIFQCKYCDKIFTSQKGAVIHERSAHTGERPAECPICLKGFFHVEYLKEHMRLHTGETPFKCPVCGRGYAQLGNMKSHLRIHRVCDVDASTLSKMKPNYIKLLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00634805;
- 90% Identity
- iTF_00634805;
- 80% Identity
- iTF_00634805;