Ecre016840.1
Basic Information
- Insect
- Ectropis crepuscularia
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_963693475.1
- Location
- OY856347.1:2429062-2439024[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-72 2.7e-67 228.7 18.1 1 257 141 392 141 426 0.92 2 2 0.48 2.5e+04 -4.3 7.8 131 160 452 481 434 500 0.41
Sequence Information
- Coding Sequence
- ATGCTCACGCCGCCGCAAAAACAGCAGCGCGTAGAGTGTTCACGTGCATTTTTGGACCTCTGTAATGAAGACAAGGATGGTGTTTTAACTCGAATTGTTACTGGGGACGAAACTTGGGTTCATCGTTATGAACCTGAGTCGAAACAAGACTCCATGCAATGGCATAGAAAAGCCACAGCACCTCCCAAGAAGTTTAAGGTGTCACAGTCAGCTGGAAAAGTCATGGCAACGGTCTTTTGGGATTCAGAAGCAATATTATTGATCGATTTTAAAGATAAAGGTGTTGCCATAACCGGAGAATACTACGCTTCAATATTAGAGCGACTAAAAGAAGCAACTAAAGAGAAAAAACGGAGAAAATTGACGAAAGGTGTGCTGGTTTTGCACGACAACACGGCCCGTCCACAAGAGCCGCGTTGCGCGGAGCAGCGcctggcggcgcggcgcgcggcgcgggcggagGCGCGCGAGATACGCATGCGCGAGCTGGAGCGACAGCAGCGCGAGCAGGAGGACCACGCGGACAAGGCGTACGACATGTACGCGGAGACGGTGGGGCGGCGCGGCGGACCACGGCTAGCGGCGCTGGCCCCGGCCGCCGGCCTGACGCACTCGCCGCGCCGGACGTCCGAGGACTCCGCCGACGACGCCTTCAACGTTAAGGACCTCAGGCACGAGTTGAAGGAGGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTGCACTACCAGCTCGAGCTGCTGAAGGACCGCATCCTCGAGCTGCAGGAGGAGCACGCGCAGCTGCAGCGCGAGCACAGGGAGAAGTGTTCCGTGCACGAGCGTCTGCGGCGCGAGCAGGCGGGCACGGAGCGCGAGCTGTGCCGCGCGCGGGACGCGGTGCGCGCGCGGGAcgcggccgcggccgccgccgGGTTCGCGTTCGCGGAGGCCGCGCCCGGCGCCACGCACGCCGAGGGGTTCGGCGCCGTGCCGCCGCTCGCGCTGCTGACCCACCTGCACGAGCAGGCGCTCGACGACCACGGAGAGGGCACGCTCGACGTGCGGTTGCAGAGGCTGGTGTCGGCGAAGTGCGAGCTGGAGTCGGAGGTGCGCAAGCTGAAGCTGGCGCTGAACGAGGAGCGCGCCGCGCGCCAGAACGGGGGCGGCGACCCGCGCGCGGACCTGGAGCCCGAACTTGAGGGTCTGCGCAAGTCGGTGTCGGAGGCGAAGggtcgcgcggcgcgggcggagGCCGAGGCGGCGCTGCAGGCGGCGGCCGTGGCGCGGCTGGAGGCGCAGCTGCAGCGTCTGCGCGCGCGACAGGACGCCACCGACTCCAGCGAGGAGCAGCTCAAGCAGGAGCGACGCAAGCTGCAGAGAGAGGCGCGGGAGGCTCTGAACCGCGTGGAGGAGCTGGAGACGGAGAACAGCCACCTGGTGAAGCGGCTCGACAAGCTGAAGAACGCCAAGTCCGCGCTACTGAAGGAGCTGTGA
- Protein Sequence
- MLTPPQKQQRVECSRAFLDLCNEDKDGVLTRIVTGDETWVHRYEPESKQDSMQWHRKATAPPKKFKVSQSAGKVMATVFWDSEAILLIDFKDKGVAITGEYYASILERLKEATKEKKRRKLTKGVLVLHDNTARPQEPRCAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGPRLAALAPAAGLTHSPRRTSEDSADDAFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRILELQEEHAQLQREHREKCSVHERLRREQAGTERELCRARDAVRARDAAAAAAGFAFAEAAPGATHAEGFGAVPPLALLTHLHEQALDDHGEGTLDVRLQRLVSAKCELESEVRKLKLALNEERAARQNGGGDPRADLEPELEGLRKSVSEAKGRAARAEAEAALQAAAVARLEAQLQRLRARQDATDSSEEQLKQERRKLQREAREALNRVEELETENSHLVKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -