Eara018265.1
Basic Information
- Insect
- Ecitomorpha arachnoides
- Gene Symbol
- -
- Assembly
- GCA_027574945.2
- Location
- JAODGD020033086.1:7065-7665[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.49 3.1e+03 -1.1 0.0 59 66 7 14 5 29 0.69 2 3 0.43 2.7e+03 -0.9 1.2 32 47 52 61 41 71 0.57 3 3 3e-16 1.9e-12 47.6 2.8 5 69 92 156 89 157 0.95
Sequence Information
- Coding Sequence
- ATGAGTTCCTTCGGCACGTGTAAACTTTGCGGTGAGAGGATATCGTACAGCCCCGATCACGTTCAGAACTATGGGTTGCACCTTATCGAAAAACATCCGGAGATAGAGTTTGGCCATTTCGCACTGATCTACGAACCCACTGCAAAGTCATCATGTGTCCCATGCCCTTGCGGATGCGGGTGCGGGATGAAGGATTGTCTGACAAGATCCAAAGGACGACAACGATCgaataattataaaacaACCATTCAAAGTTGGAAGTGCGCTCAAAATCCTTTCCTCTGCCCGCGATGTAACAAAACGAATCCCCCGCTGATCAAGCGCCAGCGGCATAAATTGACAGGATCAAGCTGGATCGCGTGTATGCTGCTGGGATGCTGGCCATTCTGCTTCCTGCCGTTCATCATCAGCGGCAGCGATTTGTTCTACTTGTACTGCAAGGAATGCGGCTATTACATTGGCATGTTCGACCGTCGCGTTAGCGCCATTGACAAAGTACCTCCGTGCGCCGTCCCTGCTACCGGCGATGCACAGATTTGCGGTTGTCTCTAA
- Protein Sequence
- MSSFGTCKLCGERISYSPDHVQNYGLHLIEKHPEIEFGHFALIYEPTAKSSCVPCPCGCGCGMKDCLTRSKGRQRSNNYKTTIQSWKCAQNPFLCPRCNKTNPPLIKRQRHKLTGSSWIACMLLGCWPFCFLPFIISGSDLFYLYCKECGYYIGMFDRRVSAIDKVPPCAVPATGDAQICGCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00632435;
- 90% Identity
- iTF_00632435;
- 80% Identity
- -