Eara014055.1
Basic Information
- Insect
- Ecitomorpha arachnoides
- Gene Symbol
- Prdm10
- Assembly
- GCA_027574945.2
- Location
- JAODGD020025444.1:4968-8075[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.41 1e+04 -2.8 0.0 16 27 133 144 132 145 0.84 2 9 0.048 1.2e+03 0.2 0.0 26 48 246 268 241 271 0.91 3 9 0.02 5e+02 1.4 0.0 25 48 410 433 403 435 0.85 4 9 6.2e-05 1.6 9.4 0.0 26 45 474 493 468 499 0.92 5 9 0.14 3.6e+03 -1.3 0.0 26 45 506 525 501 530 0.79 6 9 0.29 7.4e+03 -2.3 0.0 26 46 533 553 526 555 0.84 7 9 9.1e-06 0.23 12.1 0.0 20 46 555 581 551 584 0.92 8 9 0.0024 62 4.3 0.3 21 48 584 611 581 618 0.89 9 9 0.0019 49 4.6 0.1 26 48 641 663 634 666 0.91
Sequence Information
- Coding Sequence
- ATGTTCAACGGCGCAGAGGACAAAACGCCCCACGACACATACCCCATTTGTGGAATCTGTGGCGAGCCACACGAAGCGCCCGACTGTGATATCGTTAGTTTAAAAGCGACAATAAGCGACACGCCAGTATTATCCAAAGCGCGCCAGTCGCTTCCGGCCGCCCTGCGCCTCGTTGCCATGGCAGATGGCACCCAATCAGTGCTGGCCCTCGAGGCTATCGCGAAGGGTACCAGGTTTGGGCCCTATGAGGCCAAGGAGCAGTTCTCCATCCCGCCCTCGGTCGTCATGCCGCTGAAAGTGTTCAAGAATGGCGACGACGCGGACGACAACTACTTCAAGGAGTACTATCTCAACACGACCAACGAGTACGAGTGCAACTGGATGTGCTTCGTCGGCCGGGCGCACAACCAGAGCGAGCAGAACTTGATTTGCTTCCAGGACGCCGGGCAGATATACTTTATTTCCGTGAAGGACATCGGCCCCAAGGAGCACCTGAAGGTGTGGTACGCGCCGTACTACGGCAAGATGATGAAGATGGGCGCGCTGCTCGAGTCCGGCGAGGAGCCGGCGGCGGCGCCGCAGGTGAACGCGGACGAGCTGAACGCGCTGATGAAGAAGCAGCAGAATATTCGGGACAGGAAGACGTGGATCTGCAAGTTCTGCGGCAAGCACGAGGAGAACATCGCCACCTTCGCGATGCACATCAGCGAGCACTATTCGGCGAAGCTGCGGAAGAATTGCGAGCTATGCGACGCAAAGTTTCAGACGGCCAAGGCTTTAAACAAACATATTTATATTCAACACAACGAGTCCTTCAGCAGCGCTAAACTGCCCCCGGACATGGCTAATAAGCAGCCGGCGGACGTGAAGCACGCCAGTCAACCGGCGGATCCGCTGCTCAACGACGTGCCCGGCGACAACGTCCTGCTCGAGCACCTCAACTTCCAGGACGCCTCCAGCCTGCCCAACGAGACGCTCCAGCTGAACGTCGACACGATACTCGACGAGGACGAGAACTTCAACTTCGAGCTCGCCAAGGAGATCGACAGGGAGCCGGAGAGGTTCGTCTGCGACATCTGCCTGAAGGAGTTCGGCAAGCTGAAGCTGCTCATCGTCCATCTGAACGCGCACACGGGCCGCTTCACGTGCGCGCAGTGCATGCGCGTGTTCGTGCGCAAGGAGAACTTCGTCGCGCACAAGTGCATCGGCAACTCGTCGACCGCCGAGAACAAGTGCGCGATCTGCGACAAGCTGTTCACGCTGAACAAGTACCTCAAGCGGCACGTGGACCGCGCGCACGGCCCGAACCTGCGGTGCGCGCGCGAGTGCAAGACGACGTTCGGCAGCAAGGAGGCGCTGGACGCGCACTCGTGCAGCGAGCGCCTCGCGCAGCTCGCCGACGCGCCGCGCGGCGAGTTCACGTGCCACCTGTGCGCGAAGGTGTTCGGCAAGCAGCGCAATCTCTCCAGACACTTGAAGACGCACGAGAAGGGCGGCGCCGCCGCCGTCGCGCACATCTGCGAGGTGTGCTCGAAGCAGTTCACGAACATGAAGGCGCTCCGGCAGCACTTGGCCACGCACAAGGAGCCCGAGTTCGTGTGCATGGTGTGCGAGAAGAGCTTTCAGCGCAAGCAGAACTTCTTGGAGCACATGGAAATGCACAAGTCGGAGTCGCCGCAAACGTGCAACGTTTGCAACGCGAAATTCACCCAGAAGAAGTTTCTCGCGCAACACCTCCTGCTGCACACGGACGAGCAGACGTTCGCCTGCGCCGAGTGCCCGCAGCGCTTCCGCCAAAAGTCCAATCTCACGAAGCACGTCAACGACAACCACTCGCGCGAATGCGCCAAGTGCTCGATCAGCTTCGGCACGCCGGACGAGTGCCGCGCGCACATCAATGCCGCGCACACCGACCGCTACGAGTGCCCGGTGTGCAACATCAAGGTGAAGCTGCGCAGCTCGCTGAAGCGGCACGTCAAGCAGAAGCACACGCCCGACCAGTACGACGCCGCCAGCTTCGAGGAGTACGTGAACGAGATCGACAAGAAGTTCAAGGAGGCGGCGATCGCCACGTCCGGCTCGTCGAACTCCGCCAGCTCGCTGACGCTGCCGCTAGAGGGCGACGCGGCGGACGGCGACGCGAAGAAGAAGAAGGTGAAGCCGTCGCCGACgaagaagaaaaagatCGAGCTGGTGTCCAACATCCTCGTGACGATGGGCGGCGAGACGATGGTGAGCGAGGCGAGCACGAGCAGCGGCGGCGGTCTGCAGGCTCAAGTACAAAGCGAGAAGATGGCGGCGGTGGCGGCGCCGGGCAGCCAGGAGGAGGCGGAGATGCTTAATCTGTTGCAGGTGAATAACTCGGAGGTTATGCAGGACATGGCGAGCAGTTTGCAACTGGACGAGATCGTGAACGTGCTCGGCGGCGGTGGCAAAGCGCCTGGGCACGTGAACGCGTTAGACTACGGGAATATGGCAATGGAGTTCGAGACAAATTTCGTGAGCAAGGCCGGCGAGATCGGCATGACGCACACTTTCGACGGGGACTCGGTGTGTCTGTCCATGCCGGAGTTGAACGAGCACGGACAGCCCATCGCGATAGGCGGCGAGAACATTCAGTCGTCGTTTATACTAGAAAACGCATCGTTGAACGGACCTGTGGAGCAAGTCGTGTTATACATTTTAGATCAGAAGCCAAGTTAG
- Protein Sequence
- MFNGAEDKTPHDTYPICGICGEPHEAPDCDIVSLKATISDTPVLSKARQSLPAALRLVAMADGTQSVLALEAIAKGTRFGPYEAKEQFSIPPSVVMPLKVFKNGDDADDNYFKEYYLNTTNEYECNWMCFVGRAHNQSEQNLICFQDAGQIYFISVKDIGPKEHLKVWYAPYYGKMMKMGALLESGEEPAAAPQVNADELNALMKKQQNIRDRKTWICKFCGKHEENIATFAMHISEHYSAKLRKNCELCDAKFQTAKALNKHIYIQHNESFSSAKLPPDMANKQPADVKHASQPADPLLNDVPGDNVLLEHLNFQDASSLPNETLQLNVDTILDEDENFNFELAKEIDREPERFVCDICLKEFGKLKLLIVHLNAHTGRFTCAQCMRVFVRKENFVAHKCIGNSSTAENKCAICDKLFTLNKYLKRHVDRAHGPNLRCARECKTTFGSKEALDAHSCSERLAQLADAPRGEFTCHLCAKVFGKQRNLSRHLKTHEKGGAAAVAHICEVCSKQFTNMKALRQHLATHKEPEFVCMVCEKSFQRKQNFLEHMEMHKSESPQTCNVCNAKFTQKKFLAQHLLLHTDEQTFACAECPQRFRQKSNLTKHVNDNHSRECAKCSISFGTPDECRAHINAAHTDRYECPVCNIKVKLRSSLKRHVKQKHTPDQYDAASFEEYVNEIDKKFKEAAIATSGSSNSASSLTLPLEGDAADGDAKKKKVKPSPTKKKKIELVSNILVTMGGETMVSEASTSSGGGLQAQVQSEKMAAVAAPGSQEEAEMLNLLQVNNSEVMQDMASSLQLDEIVNVLGGGGKAPGHVNALDYGNMAMEFETNFVSKAGEIGMTHTFDGDSVCLSMPELNEHGQPIAIGGENIQSSFILENASLNGPVEQVVLYILDQKPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00631659;
- 90% Identity
- iTF_00631659;
- 80% Identity
- iTF_00631659;