Eara001573.1
Basic Information
- Insect
- Ecitomorpha arachnoides
- Gene Symbol
- egg
- Assembly
- GCA_027574945.2
- Location
- JAODGD020002720.1:1-1414[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.3 1.2e+04 -3.5 0.0 32 38 61 67 60 68 0.84 2 3 1.1e-11 4.2e-08 33.2 0.1 7 75 101 163 98 165 0.90 3 3 0.26 9.3e+02 0.0 0.0 44 58 242 256 239 286 0.83
Sequence Information
- Coding Sequence
- GGGGCGCCATACGTCGAGTACAGCTCGATCCGCGACGACAACGACGTGGTGTTCGTGTCGCAGCAGCCGCTGGAGAAGCCGGGCTCGCGCGCGGTCGCGAAGAAGAGCACGCGCCCGCCGCCGGCCGTCGCGCCGTCGCAGCATCGCCCGCCCGTGCAGCACGAGAAGCCGCCGCCGGGCAAGATCGTCTACTACACGCCGCGCAAGCCGTACTCGTTCTACCAGTACAAGCCGCACGCGTGCTCGGGCAGGTGCGTCAAGTTCATCACGCCGCTGGGCCGCCTCAAGGGCTACGGGCCGCTCGCGAAGCCGCTGCTCAGCGGCTTCTATCGCATGCTGTACAAGGCGAAGTACCGCCGGCCGTTCGTCCTCTACAAGACGCCGTGCGGACGCACGACGCGCACCATGGAGGAGCTGCACTGGTATCTGCGCGTCACCGGCAGCGAGCTGACCGTGGACCTCTTCGACTTCGACCCGACGGTGCGCTGCCTCGCCGAGTTCATCCTCGAGCCGGACGCGTGCATCAACAAGGACCTCTCGGAGGGCATGGAGCAGGTGCAGGTGCCGGTGGTGAACTACGTGAACAACAAGGTGTGCGACTTTGCCGGCTACTCGACGATGCGGACGCCGCTGGAAGGCGTGAATCTCAACCTCGACCCGGACTTCCTCACGTGCTGCGACTGCGCGGACGACTGCGCCGACAAGTCGGCGTGCGCGTGCTGGCGGCTCACGCAGGAGGGCGCCAAATACCTGCACCGCAATCCCGACCACGTCGGCTACGTGTATCGCCGGCTGCTGGAGCCGGTCTCGACGGGCATCTACGAGTGCAACGCGCGCTGCAAGTGCAGCAGGACGTGCCTGAACCGCGTCGCGCAAAATCCGCTCCAGCACAAGCTGCAGGTGTTCCTCACGTCGAACGACCGCGGCTGGGGCATACGCTGCCTGAACGACATCCCGCAGGGCTCCTTCATCTGCATCTACGCCGGCTCGCTGCTGACGGATCAGATGGCGAACGAGGGCGGTCAGACCTGCGGCGACGAGTACTTCGCCGAGCTGGACTTCATCGAGACCGTCGAGGGCATCAAGGCCGACTACGAGGACGAGGCGTACCAGAGCGACGGCGACGTCGAGCCGAAGAGCGCCGCGCCGGAGATCAGGAAGGCGACGAAGCCGAAAGCATCGCCGCCTCCGCCGCCGCCGCCGCCCGCGCTCGACGCCGCCGCCGGCGGCCAAGCGGCGCCGGTCCCCC
- Protein Sequence
- GAPYVEYSSIRDDNDVVFVSQQPLEKPGSRAVAKKSTRPPPAVAPSQHRPPVQHEKPPPGKIVYYTPRKPYSFYQYKPHACSGRCVKFITPLGRLKGYGPLAKPLLSGFYRMLYKAKYRRPFVLYKTPCGRTTRTMEELHWYLRVTGSELTVDLFDFDPTVRCLAEFILEPDACINKDLSEGMEQVQVPVVNYVNNKVCDFAGYSTMRTPLEGVNLNLDPDFLTCCDCADDCADKSACACWRLTQEGAKYLHRNPDHVGYVYRRLLEPVSTGIYECNARCKCSRTCLNRVAQNPLQHKLQVFLTSNDRGWGIRCLNDIPQGSFICIYAGSLLTDQMANEGGQTCGDEYFAELDFIETVEGIKADYEDEAYQSDGDVEPKSAAPEIRKATKPKASPPPPPPPPALDAAAGGQAAPVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -