Etor017137.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- -
- Assembly
- GCA_949318235.1
- Location
- OX439134.1:2879781-2882397[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00039 3 8.4 0.0 19 45 170 196 157 203 0.85 2 5 7.2e-06 0.055 13.9 0.3 20 45 227 252 219 259 0.91 3 5 0.00012 0.9 10.1 0.4 22 46 257 281 252 283 0.88 4 5 0.0021 16 6.0 1.5 21 44 284 307 280 316 0.86 5 5 0.041 3.1e+02 1.9 0.3 23 43 314 334 307 339 0.85
Sequence Information
- Coding Sequence
- ATGGATATTGTCGACCTAGACATCCAATCTCTTTGTCGTCTTTGTGCTAAAGCCTACACCCATTCCTTCAACGTTTTATCTAAATCTGAGAGCCAAAGTACCAGTTCTTTGTCCAACCTTATTCAAGAGTTTTTCTCTGTTATCATTCAAGCTCACGATGGATTACCAAGTCGTATTTGCATCCCTTGTAAAACCCAACTTGAGACATGGGATAGAATAAGAAATGAAGTTGCTGAGGCTCAGGAGTATTTGACTCAATGCATGCTGGAGCAAACTGGGATGCATCAGgaTGTTGTAAATTGTACAGAAACATTAGATGAAGGTACAACAATAATTCATACCACCACAACTAGTCTTGAAACCCCTGAACTTGAATGGAATGTTACAATAACAGAATCTCCTATAATAATCAGTGATAACGTCCCTAATCTAATACCTACTCAAGAACGTTGGATTAACAATGAACCTCATCGAGAAACTgcagagaaaataaaatttgataaaaaagacAAAGATGAAGATGAATTAACTTGTAAAATATGTAGtaaaaaatttgcaagaaaaGATAACTTACGTcaacatttaataatacattCTGGTGAAAAATCATTTAGATGTGATAAATGTCCACAAAGTTTTAGTCGTTCATCTGATTTAAAAGTACATTATCGTATTCATACTTCCGAAAAACCTTTACAATGTCATTATTGTTCTCAATTATTCCGTGAATCTTCAAACTTTCGTAAACATTTACGTACACACTCTGGTGATAGGCCATTTAAATGCAATATCTGTAATAAACACTTTGCACAATCACCTCATTTAAAACGACATTTAAGAATTCATTCCGGGGAGAGGCCATATCGTTGTGAAATTTGTAATAGACAATTTTCTCAATCATCAACATTGAGAACACACGAAAGAACTCATTCAGGATTAAAACCTCATAACTGTAATATTTGTTCACGATCGTTTCGTCATGCTTCTACTTTAAAAGCTCATGCAAGAACGCATACAGGGGAAAAGGCATTTTATTGTGATAAATGTCCAAAATCTTTTTATTGGAGAACGTCTTTTGATTGTCATGTTTTGACCCATTCACCAGTCaacaagtaa
- Protein Sequence
- MDIVDLDIQSLCRLCAKAYTHSFNVLSKSESQSTSSLSNLIQEFFSVIIQAHDGLPSRICIPCKTQLETWDRIRNEVAEAQEYLTQCMLEQTGMHQDVVNCTETLDEGTTIIHTTTTSLETPELEWNVTITESPIIISDNVPNLIPTQERWINNEPHRETAEKIKFDKKDKDEDELTCKICSKKFARKDNLRQHLIIHSGEKSFRCDKCPQSFSRSSDLKVHYRIHTSEKPLQCHYCSQLFRESSNFRKHLRTHSGDRPFKCNICNKHFAQSPHLKRHLRIHSGERPYRCEICNRQFSQSSTLRTHERTHSGLKPHNCNICSRSFRHASTLKAHARTHTGEKAFYCDKCPKSFYWRTSFDCHVLTHSPVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00630913;
- 90% Identity
- iTF_00630913;
- 80% Identity
- iTF_00630913;