Etor008827.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- Trl
- Assembly
- GCA_949318235.1
- Location
- OX439130.1:12506667-12509485[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.42 3.2e+03 -1.3 0.4 10 20 169 179 155 181 0.66 2 3 1.5e-17 1.2e-13 51.3 0.0 16 50 215 249 209 253 0.91 3 3 2.3 1.8e+04 -3.7 0.8 9 16 255 262 254 271 0.73
Sequence Information
- Coding Sequence
- atGGGGAGTAGTCAATTGTACAGTTTGACATGGGGAGAGTTTGGGACATCTCTAGTTTCAGCCGTGCAGCTTCTTCGTTGTCATGGTGATCTTGTAGACGTGACTCTTGCAGCTGGAGGGAAAAGTTTTCCTGCACACAAGATTGTTCTGTCTGCAGCTAGTCCCTTTTTACTTGAACTTCTTAAAAGTACCCCTTGCAGACATCCTGTATTGTTACTGGCTGGTGTCAATGCTACAGATTTAGAGGCTTTACTTGAGTTTGTTTATCGCGGTGAAGTGAGTGTAGATCCAAGTCAACTGCCGTCTCTTTTACAAACTGCCCACTGCCTCAACATTCAAGGCCTTGCTCCTGGAGCTCTCCACCCTGATttacaAAGTAAACTCGGTGACCCGTCAATGTTAGGAAGTCACCATTCAATGGACAGAGATGGTGTAAATGCCTTTCCTCCagtgaagagaaaaaaaaagggaaaacgTAAAAATCCGGATGGCACAATAGGAGGTCCCAGTGGCAAGAAACATAGATCCAGATCTGAAGGTCACGGAGGAGGTTTGGTGTCGGATCATGATCTCCTATCTACTGAAGGATCAATGACCTCTGAAGGTGATCTTCACGCACTAAATGGAGATGAAGGTGGCTCAAAAGTAAGAGGAGCTTCAGATCAGCCAGCTACTTGTCCTTTATGTGGAGCAACTTTAAGACAAGCAAGAAATTTACGTCGCCATTTGGAGATGCTACATTTTGGTGCTGGTAAAATACCACCCCCTGATACAGAATCTCCATCGGGAAATAATTCTCCTAGTACAACAAATGCTGGACATAGAAGTACATCACGTGGTTCTAGTCATCAATCTGTACCTGCGTCACCTGGGGCAGCCGGTACTCCAGGATCAGATCAATCAGTTGCCACAGTAGTTGTGATGCCATCAGCATTATGTCAGCCAGTGATGTTAGCAAGTCCTGAAGATCCAAATCATTCATCAAATCATCCACAACATCACCACGATCATCACAACCAAACTCGAGCAACACCGCCTAATTTAGCTTGTGTATTAGGTCCACCGTTATTACCACCTCCTTCTGTTGCAACGTCAATGATGGGACATCATTCCCATCATAATCCATTTATGAGATATCCGGGTCATCCTGCTGATTTAGTTGGTAGAGCAGATCAACATCTGCTCCGTGGTATTTATTCTGACAGTAGGTTGCCCAGACCTGATCCTGGTGGTGGTATGGGGGGTACTGAAATGTAG
- Protein Sequence
- MGSSQLYSLTWGEFGTSLVSAVQLLRCHGDLVDVTLAAGGKSFPAHKIVLSAASPFLLELLKSTPCRHPVLLLAGVNATDLEALLEFVYRGEVSVDPSQLPSLLQTAHCLNIQGLAPGALHPDLQSKLGDPSMLGSHHSMDRDGVNAFPPVKRKKKGKRKNPDGTIGGPSGKKHRSRSEGHGGGLVSDHDLLSTEGSMTSEGDLHALNGDEGGSKVRGASDQPATCPLCGATLRQARNLRRHLEMLHFGAGKIPPPDTESPSGNNSPSTTNAGHRSTSRGSSHQSVPASPGAAGTPGSDQSVATVVVMPSALCQPVMLASPEDPNHSSNHPQHHHDHHNQTRATPPNLACVLGPPLLPPPSVATSMMGHHSHHNPFMRYPGHPADLVGRADQHLLRGIYSDSRLPRPDPGGGMGGTEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00630731;
- 90% Identity
- iTF_00630731;
- 80% Identity
- iTF_00630731;