Basic Information

Insect: Ecdyonurus torrentis
Gene Symbol: PRDM9
Assembly: GCA_949318235.1
Location: OX439131.1:49263028-49276017[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.13 9.2 7.3 1.2 2 23 569 591 568 591 0.95

2 7 1.9e-07 1.4e-05 25.6 2.3 1 23 662 684 662 684 0.98

3 7 0.026 1.8 9.5 3.7 2 23 691 712 690 712 0.97

4 7 6.9e-05 0.0048 17.6 4.8 1 23 718 741 718 741 0.95

5 7 1.2e-07 8.5e-06 26.3 0.5 2 23 748 769 747 769 0.98

6 7 0.00016 0.011 16.5 4.5 1 23 775 797 775 797 0.99

7 7 0.00079 0.055 14.3 2.5 1 23 803 825 803 826 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.13	9.2	7.3	1.2	2	23	569	591	568	591	0.95
2	7	1.9e-07	1.4e-05	25.6	2.3	1	23	662	684	662	684	0.98
3	7	0.026	1.8	9.5	3.7	2	23	691	712	690	712	0.97
4	7	6.9e-05	0.0048	17.6	4.8	1	23	718	741	718	741	0.95
5	7	1.2e-07	8.5e-06	26.3	0.5	2	23	748	769	747	769	0.98
6	7	0.00016	0.011	16.5	4.5	1	23	775	797	775	797	0.99
7	7	0.00079	0.055	14.3	2.5	1	23	803	825	803	826	0.96

Sequence Information

Coding Sequence: ATGTTTGCAGACCATCGTTGTCATGCTTGTGCAGAGAAGAAACAAGCCACAGCTTCTTTGCTGGACCAAAAGTTAGAGAAGGCAGTAAATTTTCTAAATGTTCAGAATGATGACAAAGATAAAGAGGTATGCAGAGACTGTGAGCAGCAACTTGATCACTGGTCCATATTTCTACGTAGAGCAGAGAAAGCTAATGCATTGTTCAAAAATTCTGCTCAACGTGCTGCGTCAATCACAGAGCGCGCCTTGTGTGAGAAATTTGACATCCAAGCTTGCATCGTGAGAGTGGAGAGAGTTGTGAGTGATGTGAGTGAGCAAGAAGTTGACGTGGAGTCCAGCGACGTTGTAGAGAGCAACATTGCAAGTGTCAGTAACAGTGCAGCGTTAGAGAATATTGTTGCAAGTAACAGTGCAGAAGTTGATAATGTTAAATCTGTAGTCTTTCGCTCGTTCGTCGCGATGGAGGAAAACTTTGAAGACATGGACGGCGAGATGTTGGCAGCCAAAGCAGCCACAGAGACTTCCATGTATTTTTCGCCTGAACAATGGGAGCAGTTCTCACCTATCGAACGTCAGCGGCGAGTCTCGCAATTGAGGAATCATTTTGTAATGCAGAAAATTGGCATGACAAATACTCCACCTGAGTTCGTACTTCAGTTCAGAAAACTCGAAGCAAGAAAGAAAGCTGCGGAGTTGAAGAAATTAACTCATGACCAGAATCAAGAAAGACCCATCAAGCCCCCTGTAGTCAAAGACGTGAAGATCCTCAAGAACAAGGACGGCTACTACTATGGTAAAGTAGCCAGACAAACACCAGACTGGCCTGGAGTCGACTACATACTCAAAGAGAGAGACCCAGAACCTCAGAAGCAGAGAGGTAATGTGTTGAAGAGAAGCTACACCCCTGCACTACAGAGTAGTGGGCAGGCCTCGTGTAGTAGAGTCTTGACAGTCAAGCAGATGGACAGAAGCTACGTACAGGCCTCGAGTAGTAGGGCCTTGCCAGCCAAGCAGATGGACAAACCAGAGCAAGGGGACCAGGAAGACCAGCCTAGGTACCCCAAGAGAAACATCAAGAGGCCGTATTACAAAGAAGATCCAGTACCTGAGGAGGAAGACTTCAGCTACTGCTGTGTATGTGAAGGTTCTGTGCTGGGAGCGTGTGAAGACCACGGCAGACCGTTCAGATTGTTTAGCACTCCAGTCAAGTCATCTGTATGCAAGGACAGAGCAGCTCGCACGCTACCCAAGGGATTACGTATTGGAAAGTCGTCAATCCCTAATGCAGGTATGGGAGTTTTTGCTGTGCTCCCCATTCCTCCACACACCATGCTGGGGCCTTACGATGGCCAGCTACTGACCAAGAGCAACAATGACGGCTACTGCTGGATGATTCGTCGAGGCAGCGCAGGCAACCTGAGTGTTGACGCCAAAGACGAGACGAGAGCCAGCTGGTTGCGCTACGTCAACTGTGCCACTCATGACTCCATGCAGAACCTGGTGCCTGTGCAAGAGAAGGGACAAATCTTCTACCTCACCAGGCAGTGGATTGCTCCAGGAGATGAACTGCTGACGTGGTATGGCAAAAGTTTCATGCTAGACCTAGGGATTGACCTGCAGGCTTACTTTGAGCCTAAGACTGATGAGTCTAAGACTGAGCGAGCCTTGTCACCTGTCATCTGGAAGAAAGTCGGCAAGGCGCTGCAGTGCGTGTGGTGTTCCATCAGTTTCTCCAGCGTCAACTTTGTCCAACGTCACGTGCACACCAAGCACGGCTCAGAACATTCTCTTCTTGTCCTGCAGCACAAAGCAACCATCGTGTTCCCTCCGTCACGAAGCAGCACGGCTATCGGTGCATGTTTTGTGCAGAATGAGGTGACGTCAAGCCTAATGATGAAACTACAGCAACGTGCAGGGGGGGAAGTGACGGAGAGAGACAAAGTGTTAGCTAGGAGAGTGAGAGATGATGGTAAAGACAGACCTTTTGTGTGCAGTGTCTGTGGTAAGAAATATACTACCCAGAGTCACTTAACTGCACACAAGAGAGTACATGATGAAGCTAGGGCTCTCAAGTGCAGTCATTGTCCTTATGTAACTGGACTCAAACAACATTTTGATCGTCACATGTTGACTCACACGGGACAAAGAGATCATGTGTGTCAAGTGTGCAACAAATCTTTCACACATAAACATAATCTAGTGATGCATGTGAAGGAAGTCCATGACAAAGTGAGAGATCAGCAATGTCCTTATTGTGAGGAGACTTTTGCTCAGAAGTCAAACTTGGTCAAGCATGTCAGGACACATACAGGTGAGAAGCCTTATCAATGTAGTCAATGTGAATATAAGTGTGCAGAGAGTGGTCACTTGACTTCACACATGAGAACACACTCAGGTGAGACACCTTACCAGTGCACCATGTGTGACTACAAGGCTGCACGCAGTAACAGTCTCAAGAGTCATGTCAACAAACATCACTGA
Protein Sequence: MFADHRCHACAEKKQATASLLDQKLEKAVNFLNVQNDDKDKEVCRDCEQQLDHWSIFLRRAEKANALFKNSAQRAASITERALCEKFDIQACIVRVERVVSDVSEQEVDVESSDVVESNIASVSNSAALENIVASNSAEVDNVKSVVFRSFVAMEENFEDMDGEMLAAKAATETSMYFSPEQWEQFSPIERQRRVSQLRNHFVMQKIGMTNTPPEFVLQFRKLEARKKAAELKKLTHDQNQERPIKPPVVKDVKILKNKDGYYYGKVARQTPDWPGVDYILKERDPEPQKQRGNVLKRSYTPALQSSGQASCSRVLTVKQMDRSYVQASSSRALPAKQMDKPEQGDQEDQPRYPKRNIKRPYYKEDPVPEEEDFSYCCVCEGSVLGACEDHGRPFRLFSTPVKSSVCKDRAARTLPKGLRIGKSSIPNAGMGVFAVLPIPPHTMLGPYDGQLLTKSNNDGYCWMIRRGSAGNLSVDAKDETRASWLRYVNCATHDSMQNLVPVQEKGQIFYLTRQWIAPGDELLTWYGKSFMLDLGIDLQAYFEPKTDESKTERALSPVIWKKVGKALQCVWCSISFSSVNFVQRHVHTKHGSEHSLLVLQHKATIVFPPSRSSTAIGACFVQNEVTSSLMMKLQQRAGGEVTERDKVLARRVRDDGKDRPFVCSVCGKKYTTQSHLTAHKRVHDEARALKCSHCPYVTGLKQHFDRHMLTHTGQRDHVCQVCNKSFTHKHNLVMHVKEVHDKVRDQQCPYCEETFAQKSNLVKHVRTHTGEKPYQCSQCEYKCAESGHLTSHMRTHSGETPYQCTMCDYKAARSNSLKSHVNKHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00630934;
90% Identity: iTF_00630975;
80% Identity: -