Basic Information

Insect: Ecdyonurus torrentis
Gene Symbol: PRDM9
Assembly: GCA_949318235.1
Location: OX439131.1:49005378-49022207[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.76 54 4.9 1.4 1 14 158 171 158 174 0.86

2 9 0.14 9.8 7.2 1.2 2 23 590 612 589 612 0.95

3 9 1.6e-07 1.2e-05 25.9 0.9 1 23 683 705 683 705 0.98

4 9 0.034 2.4 9.1 3.3 2 23 712 733 711 733 0.97

5 9 4e-06 0.00028 21.5 0.8 1 23 739 762 739 762 0.95

6 9 1.4e-07 9.7e-06 26.1 1.9 2 23 769 790 768 790 0.98

7 9 0.00014 0.0097 16.7 4.3 1 23 796 818 796 818 0.99

8 9 2.7e-05 0.0019 18.9 2.2 1 23 824 846 824 846 0.99

9 9 0.0043 0.31 11.9 4.2 1 23 852 874 852 875 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.76	54	4.9	1.4	1	14	158	171	158	174	0.86
2	9	0.14	9.8	7.2	1.2	2	23	590	612	589	612	0.95
3	9	1.6e-07	1.2e-05	25.9	0.9	1	23	683	705	683	705	0.98
4	9	0.034	2.4	9.1	3.3	2	23	712	733	711	733	0.97
5	9	4e-06	0.00028	21.5	0.8	1	23	739	762	739	762	0.95
6	9	1.4e-07	9.7e-06	26.1	1.9	2	23	769	790	768	790	0.98
7	9	0.00014	0.0097	16.7	4.3	1	23	796	818	796	818	0.99
8	9	2.7e-05	0.0019	18.9	2.2	1	23	824	846	824	846	0.99
9	9	0.0043	0.31	11.9	4.2	1	23	852	874	852	875	0.96

Sequence Information

Coding Sequence: ATGTTTGCAGATCATCTTTGTCATGCTTGTGCAGAGAAGAAACAAGCCACAGCTTCTTTGCTGgaccaaaagtttgaaaaagCAGTAGATTTTCTAAATATTCAGAATGATGACAAAGATAAAGAGGTATGCAGAGACTGTGAGCAGGAACTTGATCACTGGTCCATGTTTCTACGTAGAGCAGAGAAAGCTCAAGCATTGTTCGAAGTTGCTGCTCAACGTGCTGCGTCAATCACAGAGCGCGCCTTGTGTGAGAAATTTGACATCCAAGCTTGCATAGTGAGAGTGGAGAGAGTTGTCAGTGATGTGAGTGAGCAAGAAGTTGACGTGGAGTCCAGCGACGTTGTAGAGAGCAACATTGCAAGTGTCAGTAACAGTGCAGCGTTAGAGAATATTGTTGCAAGTAACAGTGCAGAAGTTGATAATGTAAAATCTGTAGTGTCTCAGGAAAAtctaaaacttacaaaatgttACAAGTGTCATGAATGTCAGATTGACTTTAACTTTCGCTCGTTCTTCGCGATGGAGGAAAACTTTGAAGACATGGACGGCGAGATGTTGGCAGCCAAAGCAGCCACAGAGACTTCCATGTATTTCTCGCCTGAACAATGGGAGCAGTTCTCACCTATCGAACGTCAGCGGCGAGTCTCGCAATTGAGGAATCATTTTGTAATGCAGAAAATTGGCATGACAAATACTCCACCTGAGTTCGTACTTCAGTTCAGAAAACTCGAAGCAAGAAAGATAGCTGCGGAGTTGAAGAAATTAACTCGTGACCAGAATCAAGAAAGACCCATCAAGCCCCCTGTAGTCAAAGACGTAAAGATCCTCAAGAACAAGGACGGCTACTACTATGGTAAAGTACCCAGGCAAACACCAGACTGGCCTGGAGTCGACTACGTACTCAAAGAGAGAGACCCAGAACCTCAGAAGCAGAGAGGAAATGTGTTGAAGAGAAGCTACACCCCTGCACTACAGAGTGGTGGGCAGGCCTCGTGTAGTAGAGTCTTGACAGTCAAGCAGACAGACAGAAGCTACGTACAGGCCTCGAGTAGTAGGGCCTTGCCAGCCAAGCAGATGGACAAACCAGAGCAAGGGGACCAGGAAGACCAGCCTAGGTACCCCAAGAGAAACATCAAGAGGCCGTATTACAAAGAAGACCCTGTACCTGAGGAGGAAGACTTCAGCTACTGCTGTGTATGTGAAGGTTCTGTGCTGGGAGCGTGTGAAGACCACGGCAGACCTTTCAGATTGTTTAGCACTCCAGTCAAGTCATCTGTATGCAAGGACAGAGCAGCTCGCACGCTACCCAAGGGGTTACGTATTGGAAAGTCGTCAATCCCTAATGCAGGTATGGGAGTTTTTGCAGTGCTCCCCATTCCTCCACACACCATGCTGGGGCCTTACGATGGCCAGCTACTGACCAAGAGCAACAATGACGGCTACTGCTGGATGATTCGTCGAGGCAGCGCAGGCAACCTGAGTGTTGACGCCAAAGACGAGACGAGAGCCAGCTGGTTGCGCTACGTCAACTGTGCCACTCATGACTCCATGCAGAACCTGGTGCCTGTGCAAGAGAAGGGACAAATCTTCTACCTCACCAGGCAGTGGATTGCTCCAGGAGATGAACTGCTGACGTGGTATGGCAAAAGTTTCATGCTAGACCTAGGGATTGACCTGCAGGCTTACTTCGAGCCTAAGACTGATGAGGCTAAGACTGAGCGAGCCTTGTCACCTGTCATCTGGAAGAAAGTCGGCAAGGCGCTGCAGTGCGTGTGGTGCTCCATCAGTTTCTCCAGCGTCAACTTTGTCCAACGTCACGTGCACACCAAGCATGGCTCAGAACATTCTCTTCTTGTCCTGCAGCACAAAGCAACCATCGTGTTCCCTCCGTCACGAAGCAGCACGGCTATCGGCGCATGTTTTGTGCAGAATGAGGTGACGTCAAGCCTCATGATGAAGCTACAGCAACGGGCAGGGGGGGaagtgacagagagagacaaAGTGTTAGCTAGGAGAGTGAGAGATGATGGTAAAGACAGACCTTTTGTGTGCAGTATCTGTGGTAAGAAATATACTACCCAGAATAACTTGACTGCACATAAGAGAGTACATGATGAAGCTAGGGCTCTCAAGTGCAGTCATTGTCCTTATGTAACTGGACTCAAACAAAATTATGATCATCACATGATGACTCATACGGGACAAAGAGATCATGTGTGTCAAGTGTGTGACAAATCTTTCACCCAGAAAGTTAATCTAGTGACACATGTGAAGGAAGTTCATGACAAAGTGAGAGATCAGCAATGTCCTCATTGTGATAAAACTTTTGCTCAGAAGTCAAGCTTGGTCAGTCATGTCAGGACACATACAGGTGACAAACCTTATCAATGTAGTCAATGTGAATATAAGTGTGCAGTCAGTGGTCACTTAACTTCACATATGAGAACACACTCAGGTGACAAACCTTATCAATGTAGTCAATGTGAATATAAGTGTGCAGTCAGTGCTAACTTAACTTCACATATGAGAACCCACTCAGGTGAGAAGCCTTACCAGTGCACCATGTGTGACTACAAGGCTGCACACAGTAACAGTCTCAAGAGTCATGTCAACAAACATCACTGA
Protein Sequence: MFADHLCHACAEKKQATASLLDQKFEKAVDFLNIQNDDKDKEVCRDCEQELDHWSMFLRRAEKAQALFEVAAQRAASITERALCEKFDIQACIVRVERVVSDVSEQEVDVESSDVVESNIASVSNSAALENIVASNSAEVDNVKSVVSQENLKLTKCYKCHECQIDFNFRSFFAMEENFEDMDGEMLAAKAATETSMYFSPEQWEQFSPIERQRRVSQLRNHFVMQKIGMTNTPPEFVLQFRKLEARKIAAELKKLTRDQNQERPIKPPVVKDVKILKNKDGYYYGKVPRQTPDWPGVDYVLKERDPEPQKQRGNVLKRSYTPALQSGGQASCSRVLTVKQTDRSYVQASSSRALPAKQMDKPEQGDQEDQPRYPKRNIKRPYYKEDPVPEEEDFSYCCVCEGSVLGACEDHGRPFRLFSTPVKSSVCKDRAARTLPKGLRIGKSSIPNAGMGVFAVLPIPPHTMLGPYDGQLLTKSNNDGYCWMIRRGSAGNLSVDAKDETRASWLRYVNCATHDSMQNLVPVQEKGQIFYLTRQWIAPGDELLTWYGKSFMLDLGIDLQAYFEPKTDEAKTERALSPVIWKKVGKALQCVWCSISFSSVNFVQRHVHTKHGSEHSLLVLQHKATIVFPPSRSSTAIGACFVQNEVTSSLMMKLQQRAGGEVTERDKVLARRVRDDGKDRPFVCSICGKKYTTQNNLTAHKRVHDEARALKCSHCPYVTGLKQNYDHHMMTHTGQRDHVCQVCDKSFTQKVNLVTHVKEVHDKVRDQQCPHCDKTFAQKSSLVSHVRTHTGDKPYQCSQCEYKCAVSGHLTSHMRTHSGDKPYQCSQCEYKCAVSANLTSHMRTHSGEKPYQCTMCDYKAAHSNSLKSHVNKHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00630926; iTF_00630969; iTF_00630948; iTF_00630903; iTF_00630975;
90% Identity: iTF_00630975;
80% Identity: -