Etor012385.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- Mbd2
- Assembly
- GCA_949318235.1
- Location
- OX439131.1:40855654-40866931[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.2e-25 2.3e-21 75.5 0.1 2 73 4 70 3 74 0.92 2 2 0.00042 1.4 8.9 0.1 24 73 104 160 72 163 0.81
Sequence Information
- Coding Sequence
- ATGTCAGTTGAAAGGAAAAAGTACGATTGTACCGCGCTGCCCAAAGGGTGGCAAAGAGAGGAGGTCATCCGAAAAACTGGTCTATCTGCTGGAAAAGTAGATGTTTATTATTAcagCCCGAGTGGAAAGAAGTTCCGCAGCAAACCCCAGCTTGCTCGTCATATCGGAGACTCTCTGGATCTAGCCACCTTTGACTTCCGTACTGGAAGAGTCAACAACATGTTGGTTCGTAAGAACAAGAAGCAGAAAGGATCACAGTTTGATTACAGCAGCAATGAGTCTCAGAACATTAGACCAGACTGCATGCCCTCGGGTCGAGGAGTTCGAAGTGATGCTTCCTTGGTCCCTCCTATCCGACAAACTGCTTCCATCTTCAAGCAGCCAGTTACTGTGTACAAAACACAGGAGGGAAAGGTTAAGTCGGATTACAAACATGGGCCACAGGAGAAGCCAAAGCAgTTATTCTGGGAAAAACGGCTAGAAGGTTTGAAGGCATGTGATCTTGATGGGATGGAGTTTAACTCTATGGAACTACCACGAGGACTAAAACCAGTGGGACCTCATGTCACTGATGAGACCATCTTACAATCTGTTGCCACTGCTCTACATGTATCTACCCAGCCAGTTACTGGACAGACTGGTTCTCGTTCAGCTTTAGATCGCAATCCTGGGGTCTTTCTCAACCCTGAGCAGCCTCTCGTACAGGCTGTAGCTGTGGCTGATGATGACATCAGAAGACAAGAAGATCGTGTGCTGGCTGCAAGGAAGAAGCTAGAAGAGGCTCTAAAAGCTTAA
- Protein Sequence
- MSVERKKYDCTALPKGWQREEVIRKTGLSAGKVDVYYYSPSGKKFRSKPQLARHIGDSLDLATFDFRTGRVNNMLVRKNKKQKGSQFDYSSNESQNIRPDCMPSGRGVRSDASLVPPIRQTASIFKQPVTVYKTQEGKVKSDYKHGPQEKPKQLFWEKRLEGLKACDLDGMEFNSMELPRGLKPVGPHVTDETILQSVATALHVSTQPVTGQTGSRSALDRNPGVFLNPEQPLVQAVAVADDDIRRQEDRVLAARKKLEEALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01348017;
- 90% Identity
- iTF_01348017;
- 80% Identity
- -