Etor006524.1
Basic Information
- Insect
- Ecdyonurus torrentis
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_949318235.1
- Location
- OX439129.1:15924547-15932096[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1 2.3e+04 -6.5 6.9 35 44 60 69 45 123 0.52 2 3 1.8e-106 4e-102 341.9 39.7 1 300 157 483 157 483 0.91 3 3 0.0023 53 3.3 5.0 121 172 482 533 481 536 0.93
Sequence Information
- Coding Sequence
- atgacgGAGATTGAATGTGGTAGTGGATCTGTGTTAGGGGTGCCTAATCAGTGTGATAATAGTAACATGGAGTGGGCAGATACCTCTGCAGGAGACAATAGTGGGACACTGCAGGAGAACGGTCACAAAGGTGACAGTGAGGACGAAGAacaggaagaagaagaagaagaagaagaggaggaggaggaagaacaagaagaagaagaagaagaaggagaagatgACAAAGAAGATGATGAAGTGTTTAAACCCCCAACCCCTCCCCCTTTACCTCCTGATGAGGATGAGGAAGAAACTTCATCCGAGAGTGAGGACTCTGATAcagacagtaaaaataaaaccgttgataaaaataaaagcaataatattcCAACACCTCCAGACCCTAAAAATTTTCCTACTTCCAAAGATGAATCAGGGGATgaggaaaattatattatggatTTTCTAGGCAAAATAACAGATCAAGCAGAGGCAAGGCTTGCTGCTCGACGCCAAGCTCGGGCCGAAGCCAGGGAAATCAGAATGCGAGAACTGGAGAGACAGCAAAAGGAAGCAGAGCAGTCAGCTGACAGGGTGTATGACATGTACACAGGGTTGCCCACCTCACCGGCTGAGATCAAACAGGTTAAAATAGACACCCCTGTGAGGTCACGAGCTGCTGTCAACAGCCAGAGAGCTGCTCTCCTCGCTACGCCTAATACTAACTACCAGTCCAGTAGGAGGTCATCAGAAGACTCAATGGAGGAGGGCATCAGTCTGAGAGATGTGCGGCAAGAGGTGAAGGAGCTGGAAGAAAGATTTAGGAATGCCATGTTCCACAATGCACAGCTTGACAACGAAAAATCTTCCTATATTTACCAAGTAGAACTGTTGAAGGATCAGATCGAACAGTTAGAGGAGGCGCACTGTCAGTTACAGAGGGAGCACAAAGAAAAGTGTAGAGAGCATGAACAACTAAAGCGAGAATCTGCTAAAATTAAGGAAGATATGGAGTTGTATAAAACTCAACTTGAAGAAAGAGATAGGTTAATTCAGGAGCATGGTCTAGTCATAGTAGGTGAGGATGCAGTGTCCAGTGAGGAGGAGTCCAGTGACGAAGATGAATCCAGTGAAAGCACCAAGAAAAGCTCCACAAAGAAGCCACGTAAGGCTCTTGTCTCTGTAGAGTCTGCACAACTCCTAGACACAGAAGAAGGTTCACTAGATGTTCGGCTAAGGAAGTTCCTAGAAGAACGTAATGAACTACAAGACCAAGTACGGCACCTCAAGCTGGAGCTAGAAGAGGAACGTAGTCGGAACAGCAAGCAGGACAGACGTGCATCAGGATCTCTCTTTAGTGTCAATGGACCTGATGGACCAGAGATAGTGGACGTACAGCGTGAAGCAGTGAAACAACTTGGTGATTACAAGTTCAAGCTTCAGAAAGCAGAGCAAGACATTTCTACATTGCAGGCCAATGTGGCACGACTGGAGAGCCAGGTGATTCGCTACAAGGCTGCAGCTGAATCCTCGGAGAAAGCAGAGGATGAGCTCAAGACAGAGAAGAGAAAGCTGCAAAGAGAGtTACGTGAATCACAAGTACAAGTTGAAGAACTAGAAACAGCAAATTCTCATTTGGTGAGGCGACTGGATAAACTCAAGAATGCAAAATCTACTTTATTGAAAGAGCTTTGA
- Protein Sequence
- MTEIECGSGSVLGVPNQCDNSNMEWADTSAGDNSGTLQENGHKGDSEDEEQEEEEEEEEEEEEEQEEEEEEGEDDKEDDEVFKPPTPPPLPPDEDEEETSSESEDSDTDSKNKTVDKNKSNNIPTPPDPKNFPTSKDESGDEENYIMDFLGKITDQAEARLAARRQARAEAREIRMRELERQQKEAEQSADRVYDMYTGLPTSPAEIKQVKIDTPVRSRAAVNSQRAALLATPNTNYQSSRRSSEDSMEEGISLRDVRQEVKELEERFRNAMFHNAQLDNEKSSYIYQVELLKDQIEQLEEAHCQLQREHKEKCREHEQLKRESAKIKEDMELYKTQLEERDRLIQEHGLVIVGEDAVSSEEESSDEDESSESTKKSSTKKPRKALVSVESAQLLDTEEGSLDVRLRKFLEERNELQDQVRHLKLELEEERSRNSKQDRRASGSLFSVNGPDGPEIVDVQREAVKQLGDYKFKLQKAEQDISTLQANVARLESQVIRYKAAAESSEKAEDELKTEKRKLQRELRESQVQVEELETANSHLVRRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -