Basic Information

Gene Symbol
snpc-4
Assembly
GCA_949318235.1
Location
OX439127.1:8447280-8460729[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 1.2 1e+03 0.3 0.1 23 45 254 278 251 279 0.76
2 6 1.6e-14 1.4e-11 44.7 0.2 1 44 285 329 285 331 0.93
3 6 5.7e-11 4.9e-08 33.3 0.0 1 44 335 382 335 384 0.91
4 6 1.1e-06 0.00089 19.7 0.0 2 43 391 432 390 434 0.97
5 6 1.3e-08 1.1e-05 25.8 0.0 3 45 442 484 440 485 0.94
6 6 6.9 5.8e+03 -2.2 0.4 39 46 759 766 758 766 0.85

Sequence Information

Coding Sequence
ATGAGCTCAAGTGACGACGATATTTGTGACTCTCACTCATTAATTTCCATCGATGATGGAAACAGTGAAACGATTGAAGAGGACAAAGACAGCGATTGTGTGTTTTTGAGTGATGAGGAGGAAGTGATAGATAgagatataattaatttactaagAGCCATAGAACAACCGGATGCAGAGCCCAATGAAGtgaACGTGGAAGATAATTCAGTTAAGGATGTCAATTCTACCCTTTTGCGATCTTGTTTGGAACTAAACAATAAGAAACAAGAACTCATAAAAGAGAATTTTGTTGAAATTCAACGAATTGTTGGAGAAATTGAAAACTTTGATGTTAAAGTACAGCTACGTTATGCTAACCCTGCAGCAAGTAATTGGTGGGGAGATGATCATACTGGTCGTTTTGACATACCTTATTTCAAGGATAAGGATCTGTTCCCTCCTCCTCCAAATCAGGATGCCATCACAAAGTTACGTAGAAGAGTCCTGGATACTGCTACAGtgttgaaacaaaataaatGGCAACAGTCGCACATGAAACTACTTGATAATGCAGTTCATAAAAACGCGTATGAAATTTTAGTGGCTCCATTAAATGCTCGCCTAAAATGCTGGGAGGATGAATTAGCActtaaattaaaacacaatGAAGACACTTCTGAAGTAAAAGAAAAACTGGTGAAACTAGACGAAGAAATCAAAGCAATTACTGGCGATCCTTTGATTAAAGTACTCTCTGATCCCAATGCTAAAATTGATTGGATGAAAATCTCAGCAactgatTTTGATGGTCGTCGCTCAGCATCAGAATGCCGTGGCATGTGGCGTATGTGTTTGATGGTTGGAGTTAACCGTAAACCCTGGACAAAGGAAGAAACTGACCATCTTAAGAAAGTTGTACGTTGCCATGGCAACGCTGGATGGGAGAGTATTGCTGAAGAAGTAGGTGGTCGTACCAGCTACCAGTGTTTCCTGCATTACCAAGTCATTTTGAACAGAGATCGTCTCAAGTGGTCATTGAGTGAAGATCGCAAACTCAAGAATCTTGTAAACAAGTTTACGCAAGGAACAAAGATTCCCTTTACTATGATTGCTCGGTATATGCCAGGACGCACTGCTTCTAATATTCGTCAGCGTTGGCGTGACTCGTTAGATCCCTCAATTCGAACAGGCAAATTCACTGTAAGAGAAGATCTGATTCTGGCGACTGCTCGACATATTCATGATATGTCATATGAGCAAATTACGGCTCTCCTGCCTGGCCGAACTGGACAGCAGTTACGTGCGCGCTACCGTTGTCTTGTGAACATTCACCCTACTACAGCCTTCACACCAGAAGAAGACAAACGGCTGGTAAGTTTGGCACAGATTAATGATGCAAACTGGTCATCACTTGTGAAAGAATTTCCTAAGAGAACAAGTGGACAATTGCGAGGCCGCTACGTACGCTTGCTGAAAAATGCAAAGATTAGTTCAAGAGAGTCACATAAATGTGTAATTAGGAAATCAAAGGTTTGGGAGACAGTAAAAGACAAAATTGTGAAACAGATGAAAGCTATTAATTCAGAAGGTAAAGATGAAGGTACTGTAATGCGCATGGTAAAAAACCCTCTCAAACCTATTGGTCGTAAGGTCAAACACAGAGATAGGTTTGATAGAGAGATCTCGCAGATCTACCGCTCCCAATATGCTCAGCCCAAGGGACGTAAGAAGAAGCATTATACAAGCGCTGATATCACGAAGATTGGAGAAAAAGGACGCCAGATTGCTGATGTTCTCAAAGCAAACGTAAATTGGACTCCTCAACGAGAAAACGAATTTCAAGAGGATAGTCAGTATCACTTGTATTCCGAGCTTCGCAAATACAACGAGAACAGTGGCTTGGCCTGCAATGGAACATCGCTCACTCACTGCATTGCTCCTAACGCAGCTACGATTGTGGGACTGCGTACACTGCTAATGGTAGAACCATTCTTACTGCGATGGAGCATTGAATCTAATCTCAGTGAAAAGAAAGAGATGGTGCATAAGACATCAACGTGTGGTAGTGATTGTCAGCAGCTCAACTTTGAGCAGGCGTGCGAACTTTTCAAGCAGCGGTGTCTGGCGCTCTTCCTCTGGCCAATGTATTTGTCTCAGCAAGGgCCGCTTCGCACTGGGAACATTTTCTGTGACAAACAACCAGACATTAATAAAAATCCAAGAGATAAAGATGAAGCCAAGAGCCCTGTCAGCAAACAGAAGATGACGAAGAGTGAGCGCAAACGTTGGCTGAAAGCTCGCTGGCAAAAATATCGTGAGGAGAAAGATGAAATGGTGCAAACAGCAGAGGCAGGTACTTCTGTCCCTCAGGCCACACCACAAGTGATGCAGGGCAGACCTGGTCGCAAGAAGGAAGATAATCCAAACGTTCCTGCAGTGGTAAATCCCAAAGGCAAGCCTGGACGTAAACGTAAGCAGCCTCTAGAGGTACCACCACTACAACAAGACCCAGAAGCAAAGAAAGATGTTTATAGTACCAGAAACAAACATGGCAAACATGTGCCAAGAAAGTTTTAA
Protein Sequence
MSSSDDDICDSHSLISIDDGNSETIEEDKDSDCVFLSDEEEVIDRDIINLLRAIEQPDAEPNEVNVEDNSVKDVNSTLLRSCLELNNKKQELIKENFVEIQRIVGEIENFDVKVQLRYANPAASNWWGDDHTGRFDIPYFKDKDLFPPPPNQDAITKLRRRVLDTATVLKQNKWQQSHMKLLDNAVHKNAYEILVAPLNARLKCWEDELALKLKHNEDTSEVKEKLVKLDEEIKAITGDPLIKVLSDPNAKIDWMKISATDFDGRRSASECRGMWRMCLMVGVNRKPWTKEETDHLKKVVRCHGNAGWESIAEEVGGRTSYQCFLHYQVILNRDRLKWSLSEDRKLKNLVNKFTQGTKIPFTMIARYMPGRTASNIRQRWRDSLDPSIRTGKFTVREDLILATARHIHDMSYEQITALLPGRTGQQLRARYRCLVNIHPTTAFTPEEDKRLVSLAQINDANWSSLVKEFPKRTSGQLRGRYVRLLKNAKISSRESHKCVIRKSKVWETVKDKIVKQMKAINSEGKDEGTVMRMVKNPLKPIGRKVKHRDRFDREISQIYRSQYAQPKGRKKKHYTSADITKIGEKGRQIADVLKANVNWTPQRENEFQEDSQYHLYSELRKYNENSGLACNGTSLTHCIAPNAATIVGLRTLLMVEPFLLRWSIESNLSEKKEMVHKTSTCGSDCQQLNFEQACELFKQRCLALFLWPMYLSQQGPLRTGNIFCDKQPDINKNPRDKDEAKSPVSKQKMTKSERKRWLKARWQKYREEKDEMVQTAEAGTSVPQATPQVMQGRPGRKKEDNPNVPAVVNPKGKPGRKRKQPLEVPPLQQDPEAKKDVYSTRNKHGKHVPRKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00630435;
90% Identity
-
80% Identity
-