Basic Information

Gene Symbol
stc
Assembly
GCA_949715965.1
Location
OX454321.1:55537314-55549891[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 1.5 3.5e+04 -3.7 1.6 15 19 133 137 132 137 0.81
2 15 0.042 1e+03 1.2 0.2 4 10 166 172 165 174 0.95
3 15 9.2e-07 0.022 16.1 15.3 4 19 180 195 178 195 0.93
4 15 1.5 3.5e+04 -3.7 1.3 6 10 221 225 220 225 0.87
5 15 2e-05 0.48 11.9 12.3 3 18 233 248 231 249 0.91
6 15 2 4.7e+04 -4.4 1.2 10 13 256 259 254 260 0.70
7 15 8e-11 1.9e-06 29.1 13.5 1 19 289 307 289 307 0.98
8 15 5.6e-07 0.013 16.8 14.1 4 18 355 369 348 370 0.86
9 15 0.0032 74 4.8 9.0 1 11 410 420 410 421 0.96
10 15 0.26 6.2e+03 -1.3 0.6 4 10 425 431 424 431 0.91
11 15 3.1e-10 7.2e-06 27.3 14.8 1 18 437 454 437 455 0.97
12 15 2 4.7e+04 -14.0 17.1 10 18 502 511 484 512 0.77
13 15 0.85 2e+04 -2.9 0.9 8 13 517 522 516 523 0.78
14 15 2e-08 0.00048 21.4 12.0 1 17 548 564 548 570 0.93
15 15 1e-07 0.0025 19.2 14.8 1 19 580 599 580 599 0.96

Sequence Information

Coding Sequence
ATGTTATACTACCAGAATGGAAACTACTCAAACAGAAATAGGCAAAATTATGAGAGGAATTTGAAGCGGCACGACAACCATTGGAAAAGCCGGGGAGAATTCCTCGAAAACAGGCGCGAAAATGGTAACTCCGATGTAAAATCCTCAAGCAAACTAGATTCCAATACAAAGAGCAATGCGATCCCAATTATCAGCGAGGATGCATTCAGTGAAAAGTTGTCTCAGCGCGAGAAACTCATCCGAGAGATTGAAGGCCGTCGACTGGAGTGTCTCGTCTGCGTTGAGCCTATAAAATATCATCAATCTGTGTGGTCCTGCGTCAGCTGCTACACCATCATTCATCTCAACTGCGTTATCAAATGGGCGTCTAGCTCTAAATCCGAAGACGGCTGGCGTTGTCCAGCTTGTCAGAATGTCACAAAGGACGTACCTCGTGACTACTATTGCTTCTGCAGCAAAGTGAAGAACCCCCAGTACAACCGTAGCGACGTAGCCCACAGCTGCGGGGAGGTTTGCGGCCGGAAGAACAATTGCGATCATTCGTGCACTCTCCTTTGTCATCCTGGACCATGTCCGCCTTGCCAGGCGAATGTGACCCGCATGTGCGGCTGCGGTAGGACCTCTAAGGTCATGCAGTGCTATATGAAGGACGATATTGAGTGTGAAGCAACTTGCGATAAACTACTTAATTGCGAGCTTCATAGCTGCAATAAGATGTGCCATCAAGGCAAGTGCCCCAAATGCGAGAAAGAGGTCACACAAAATTGTCACTGCGGCCGACAAGAAAGGCAAGTGGCCTGCACAAAGGACTCAATTGACAAGAAGAATTATTCTTGTGGGAAGCCCTGCAGTCGGGAACTAGCCTGTGGCAACCACAAATGCAAAGATGTTTGCCACTCCGGTGACTGCAAACCATGCAAGTTGACTCCTGAGGTGGTCAAGACATGTCCGTGTGGAAAAATGCAAATTGAGCCTGGTCAGCGGGAAAACTGCCTGCAACCAATTCCAACTTGTACTGGGATTTGCGGGAAGACTTTGAAGTGTGGGCAACCAGGTTCTCCTCATCGCTGCATCAGCAAGTGTCACACAGGCAACTGTCCGCCTTGCAACAAGCAGACGTCGGTAAAATGTCGTTGTGGCCACATGGACCAAATGATCAAATGCCGACAGCTATCTTCCCGAGCTGACGACGCTCGATGCAAAAAGCGCTGCACTAAGAAGAGAACCTGTGGCAGACACAAATGCAACCAAGAATGCTGCATCGATATCGATCATATCTGTCCGCAGATCTGCAACTTTTCACTTTCGTGTGGGAAGCACAAGTGTGACCGGCCGTGTCATCGTGGAAACTGTCCGCCGTGCTACAGAAGCTCGTTCGAAGAGCTCTACTGCGAGTGCAGGAATCAAGTCATCTATCCGCCAGTACCTTGCGGGACTAAACGGCCACCTTGCTCTATGCCATGCTCGAGGCAGCACCCTTGCGACCATCCGGTGCAACATAATTGCCATTCTGCTCCTACATGTCCACCCTGCATGATGTTTACAACGAAGTTTTGCCATGGTGGACACGAACAACGCAAAACCATTCCCTGCAGCCAACCCTCATTCAGTTGTGGAATGCCATGCGGCAAAAAGCTGAGCTGCGGACGTCACAAATGCATCAAGTCGTGCCACGAAGGTCCTTGTCAAACCGAGGGCGAAATCTGTAAGCAGAATTGTACGAAAGCGAGGATGATTTGTGGACATAAATGTAACGCACCCTGTCACGACGGTGATTGCCCAGAAACGCCTTGCAAGGAAATGATAGAGGTGACCTGCGAGTGCGGAAATCGAAAACAAATGCGAACGTGCCAAGATGTCTCCAGTGAATACCGGCGTATCGCAACTGCACAGTTAGCTTCATCAATGATGGAGATGCAGCGCGGTAATATGGTTGAGTTAAGCGACATCATGGGCCCTATCAAAATGACTAATAACAAAACaCTTGAATGCAACGAGGAATGCAAGGTTCTCGAGAGAAATCGGCGTCTAGCCATCGCCTTACAGTCTCGAAACCCAGAGGTGCCTTCAACAAAAATTCTGACTCGATACTCGGACAACATAAAAGGCTGGGCGAAGAAGGATCCTCAACTGGTTAAGACGATACACGAAGCCTTAACAACCTTGGTCAAGCTGGCAAAGGAGAGCCCTCAAAGGTCACGAAGCCACTCATTCCCTACAATGAACCGAGATAAACGCAGTCTCGTTCACGAAATGTGTTCCATGTTCGGTGTGGAATCAGTTGCATACGATGCGGAACCGAACAGGAATGTTGTTGCTACCGCACACAAGGACAGGtgCTGGCTACCTGCAATGAGCATCATGGAAGTAATGCAGAGGGAAAGTGGCCAGAGGCGAGTCCCTGTACCGAACAACAATGCTTGGGGTTTCAAGAGATAA
Protein Sequence
MLYYQNGNYSNRNRQNYERNLKRHDNHWKSRGEFLENRRENGNSDVKSSSKLDSNTKSNAIPIISEDAFSEKLSQREKLIREIEGRRLECLVCVEPIKYHQSVWSCVSCYTIIHLNCVIKWASSSKSEDGWRCPACQNVTKDVPRDYYCFCSKVKNPQYNRSDVAHSCGEVCGRKNNCDHSCTLLCHPGPCPPCQANVTRMCGCGRTSKVMQCYMKDDIECEATCDKLLNCELHSCNKMCHQGKCPKCEKEVTQNCHCGRQERQVACTKDSIDKKNYSCGKPCSRELACGNHKCKDVCHSGDCKPCKLTPEVVKTCPCGKMQIEPGQRENCLQPIPTCTGICGKTLKCGQPGSPHRCISKCHTGNCPPCNKQTSVKCRCGHMDQMIKCRQLSSRADDARCKKRCTKKRTCGRHKCNQECCIDIDHICPQICNFSLSCGKHKCDRPCHRGNCPPCYRSSFEELYCECRNQVIYPPVPCGTKRPPCSMPCSRQHPCDHPVQHNCHSAPTCPPCMMFTTKFCHGGHEQRKTIPCSQPSFSCGMPCGKKLSCGRHKCIKSCHEGPCQTEGEICKQNCTKARMICGHKCNAPCHDGDCPETPCKEMIEVTCECGNRKQMRTCQDVSSEYRRIATAQLASSMMEMQRGNMVELSDIMGPIKMTNNKTLECNEECKVLERNRRLAIALQSRNPEVPSTKILTRYSDNIKGWAKKDPQLVKTIHEALTTLVKLAKESPQRSRSHSFPTMNRDKRSLVHEMCSMFGVESVAYDAEPNRNVVATAHKDRCWLPAMSIMEVMQRESGQRRVPVPNNNAWGFKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01256781;
90% Identity
iTF_00937703;
80% Identity
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