Dtri043610.1
Basic Information
- Insect
- Dysmachus trigonus
- Gene Symbol
- PAX6
- Assembly
- GCA_949715965.1
- Location
- OX454324.1:2198153-2199975[+]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6e-69 4e-66 222.0 0.3 1 119 30 148 30 150 0.99
Sequence Information
- Coding Sequence
- ATGATGGTTACAACCACCCAAGAGCACATAATGCATGGTCACGCGACGTCAGTTAGCCAGAGCGCCCTCTTCGGGTGCTCCACCGCCGGCCACAGCGGCATCAATCAGCTGGGCGGCGTCTACGTGAACGGGCGGCCCCTCCCCGACTCCACCCGCCAGAAAATCGTCGAGCTGGCCCACTCGGGGGCACGGCCTTGTGATATCTCCAGAATCCTTCAGGTGTCCAACGGATGTGTTAGCAAAATTTTAGGAAGATATTATGAAACGGGATCAATAAAACCACGTGCCATTGGTGGATCGAAGCCGCGGGTTGCGACAACGCCGGTCGTTCAAAAAATCGCCGATTACAAGCGCGAGTGCCCCAGCATTTTTGCATGGGAAATTCGGGACCGGTTGCTTTCGGAGGCTGTTTGCAATAGTGATAATATTCCAAGTGTGagtaaattaatttag
- Protein Sequence
- MMVTTTQEHIMHGHATSVSQSALFGCSTAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATTPVVQKIADYKRECPSIFAWEIRDRLLSEAVCNSDNIPSVSKLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01518918; iTF_01383559; iTF_01088297; iTF_00455978; iTF_00118643; iTF_01459574; iTF_00211578; iTF_00233853; iTF_00424607; iTF_00453445; iTF_00176341; iTF_01540288;
- 90% Identity
- iTF_01114160;
- 80% Identity
- iTF_00753706;