Dtit012700.2
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:2255115-2256569[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.095 2.8e+02 3.4 0.2 21 35 145 159 139 172 0.71 2 11 0.069 2e+02 3.8 0.0 21 44 173 196 169 201 0.85 3 11 0.035 1e+02 4.8 0.1 21 47 201 227 196 233 0.79 4 11 0.49 1.4e+03 1.1 0.0 21 45 229 253 224 260 0.82 5 11 0.08 2.3e+02 3.6 0.0 21 44 257 280 253 285 0.85 6 11 0.059 1.7e+02 4.1 0.1 21 45 285 309 280 316 0.76 7 11 0.38 1.1e+03 1.5 0.1 21 43 313 335 310 339 0.75 8 11 0.31 8.9e+02 1.8 0.1 21 33 341 353 333 374 0.73 9 11 0.56 1.6e+03 0.9 0.1 21 31 397 407 393 423 0.79 10 11 0.15 4.4e+02 2.7 0.0 21 44 425 448 421 454 0.89 11 11 0.0022 6.4 8.6 0.2 23 49 455 480 450 483 0.87
Sequence Information
- Coding Sequence
- ATGGCCACAGAATATGATGAATTGCATGAACATTACGATAACAACTGTGAAGAATATAATAGTAACCTAGACGTTAAATTAGAAGACTTTGAAATTCAAACGGGAGATTTTCTCgattcaaaagcaggaatatcGTTGATGACTGATCACAGTGAAGTACAAGGTGccttattagaaaatattaaagttgaaaatttgaacGACCAATGTGATAAAAGCTTTGAACACAAACATGAACTAAAAGTTCGCAAGGTCTCTGATAAGCTCGACAAGATCGTTTTTTGTCCTAAATGTGGAAAATCGTTTGAGAAGAAGAAACTATATTATCATATTAGGAGCATGCATTGGCTCAGGAAGGTTTACATGTGTAGATTTTGTGGGAGGACGTTTCATCGCAGGACCAATCTAATAATACACACTAGAgcacacaccggtgaaaagccctttacttgcgaaatttgcAACAAGTCATATTGTGTGAAGGAAAGGCTGAAGACGCATATGAAAACACACACTGGTGagaagccttttacttgcgacgtatgtaaaaagtcattttatGACGGTAGTGGATTGACAAGGCATATTAGAAAACACACTGGTGAAAgaccttttacttgcgagatttgtaagaAATCATTTGCTTTTAGGGGTAGATTAAAAACTCATATTGaaacacacaccggtgaaaagccttttccTTGCGAGatatgtaaaaagtcattttctcaGAAGGGTGGGCTGATGActcatattaaaacacacactggtgaaaagccaTTTACTTGCGACgtatgtaaaaagtcattttgtgACGGTAGCGGACTAGCAAGGCATATTAGAAAACACACTGGTGAAAgaccttttacttgcgagatttgtaataAGTCATTTGCTTTTAAGAGTAGGCTCACCAAACACATTAAGATACACACCGGTGAAAGACCTTTTACTTGCGACGTATGTAAAAAGTCGTTCTCTGAGAAGAATAGACTAACGAATCATATTAAGTCACACGCTgatgaaaagccttttacttgcgaagtcTGTAAAAAGCAATTCTCTTGGAAGAGCAAATTGACGACCCATATGAGAACACATACCGGCGAAAAGCCTTTTGCTTGCGAAGATTGTAATTTGTCGTTTTCTACGAAACATGTACTGATGAATCATATTAGAATACACACCGGCGagaagccttttacttgcgaggttTGTAAAAAGTCGTTTACTGCGAAGAGTGGACTATCCAGTCATATGATaaaacacaccggtgaaaagccgtttccttgcgaagtttgtaaaatgtcattTGGCTGTTCTTTAAGGCTAAAAAGACATATGGTAGTGCATATGGGGGATTGCCCTTATTCTTGCGAGTTGTGTTCCGCTAAATTTACGAGTTCAGCAAATCTTACACGGCATATGAAGCGGCATGTTAAAAAGGAAGTCTAA
- Protein Sequence
- MATEYDELHEHYDNNCEEYNSNLDVKLEDFEIQTGDFLDSKAGISLMTDHSEVQGALLENIKVENLNDQCDKSFEHKHELKVRKVSDKLDKIVFCPKCGKSFEKKKLYYHIRSMHWLRKVYMCRFCGRTFHRRTNLIIHTRAHTGEKPFTCEICNKSYCVKERLKTHMKTHTGEKPFTCDVCKKSFYDGSGLTRHIRKHTGERPFTCEICKKSFAFRGRLKTHIETHTGEKPFPCEICKKSFSQKGGLMTHIKTHTGEKPFTCDVCKKSFCDGSGLARHIRKHTGERPFTCEICNKSFAFKSRLTKHIKIHTGERPFTCDVCKKSFSEKNRLTNHIKSHADEKPFTCEVCKKQFSWKSKLTTHMRTHTGEKPFACEDCNLSFSTKHVLMNHIRIHTGEKPFTCEVCKKSFTAKSGLSSHMIKHTGEKPFPCEVCKMSFGCSLRLKRHMVVHMGDCPYSCELCSAKFTSSANLTRHMKRHVKKEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627451;
- 90% Identity
- iTF_00627451;
- 80% Identity
- iTF_00627451;