Dtit012714.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:2352636-2353922[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0039 11 7.8 0.1 21 49 200 228 192 232 0.87 2 8 0.097 2.8e+02 3.4 0.1 21 41 229 249 224 256 0.70 3 8 0.038 1.1e+02 4.7 0.1 17 32 253 268 245 284 0.80 4 8 0.043 1.2e+02 4.5 0.1 21 47 285 311 278 316 0.78 5 8 0.17 5e+02 2.6 0.2 21 31 313 323 309 340 0.80 6 8 0.094 2.7e+02 3.4 0.1 21 44 341 364 333 368 0.78 7 8 0.021 60 5.5 0.0 21 45 369 393 367 397 0.87 8 8 0.025 74 5.2 0.1 23 46 399 422 395 425 0.90
Sequence Information
- Coding Sequence
- ATGGCCACAAAATATGATGAGTTGCATGGACATAACGATAATAACTGTGGAGAATATAATAGTGACGCacacattaaattagaagattttatAGTTCAAGCAGGaaatttttttgattcaaaagCGGGAATATCTTTGATAAACGACCACAATGTAACACAAGGTGCAGAATCTAATAATGATACAGGCATCAAATTAGAAGATAATAACTATGAAAACTGCAATAGTGATACAGACATTAAGTTAGAAGATTTTATAGTTCAAATTGGAGATTCTCTTGATTCAAAAGTaggaatatctttgataagcGACGACATCGTAGAGCAATGTGTCtcattggaaaatattaaagttgaaaatttgaacgaccaatgcaataaaaattttgaacaGAAAGATATACCCGAAGCTAACAAGGTCTCTCATATGCTCGATAAGAATGTTTTTTGTCCTCACTGTGGAAAATCGTTCGAGAAGAAGAAACTATATCATCATATTAGGAGCGTGCATCGGCGCAGGAAGGTTCACATGTGTAGATTTTGCGGGCGGACGTTTCGTTACAAGTGTAATCTGACGGTACATACTAgaacacacaccggtgaaaagccttttacgtGCGCAATTTGTGAAAAGTCATATTCTGAGAAGGGTGCACTGAGAATTCATATTAAAACACAACACATTgatgaaaagccttttacttgtgaaatatgtaaaaagtcattttctgtTAAGGGGCATCTGACCAAACATGTTAAAagacacactggtgaaaagccttttacttgcgaaatttgtaaaaaatcgttTACAGCGAAGCAAGTACTGCCTGCACATATTAGaacacacactggtgaaaagccttttacttgcgagatatGTAAAAAGTCGTTTCCTCGACTGAGTACACTGAaaagtcatattaaaatacacaccggtgaaaagccctTTACTTGCGACATTTGTAAAAGATCATATATTGAGAAGTGTAAACTGACGATTCATATGAGAATACACACcggtgaaaggccttttacttgcgaaatatgtaaaaagtcattttttctGAAGGATATACTTATGAGACATATTCAaatacacaccggtgaaaagccttttacttgtaaaatttgtaaaatgtcatttGGCGCCTCTGTCGGGCTAAAAAATCATATGGCAGTGCATATGGGGGATTGCCCTTATTCTTGTGAGCTGTGTTCGGCTAAATTTAAGAGTACAAATAGTTTAACGCGGCATATGAAGCTGCATGTTAAACAGGAAATCTAA
- Protein Sequence
- MATKYDELHGHNDNNCGEYNSDAHIKLEDFIVQAGNFFDSKAGISLINDHNVTQGAESNNDTGIKLEDNNYENCNSDTDIKLEDFIVQIGDSLDSKVGISLISDDIVEQCVSLENIKVENLNDQCNKNFEQKDIPEANKVSHMLDKNVFCPHCGKSFEKKKLYHHIRSVHRRRKVHMCRFCGRTFRYKCNLTVHTRTHTGEKPFTCAICEKSYSEKGALRIHIKTQHIDEKPFTCEICKKSFSVKGHLTKHVKRHTGEKPFTCEICKKSFTAKQVLPAHIRTHTGEKPFTCEICKKSFPRLSTLKSHIKIHTGEKPFTCDICKRSYIEKCKLTIHMRIHTGERPFTCEICKKSFFLKDILMRHIQIHTGEKPFTCKICKMSFGASVGLKNHMAVHMGDCPYSCELCSAKFKSTNSLTRHMKLHVKQEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627538;
- 90% Identity
- iTF_00627538;
- 80% Identity
- iTF_00627538;