Dtit012608.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:1500391-1502045[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 9 2.6e+04 -2.9 0.1 25 50 156 181 152 183 0.71 2 5 1.9e-05 0.054 15.3 0.1 20 51 208 239 197 240 0.86 3 5 0.07 2e+02 3.8 0.0 21 43 237 259 235 263 0.77 4 5 0.00066 1.9 10.3 0.0 21 46 265 290 256 292 0.89 5 5 0.084 2.4e+02 3.6 0.1 21 44 293 316 291 325 0.75
Sequence Information
- Coding Sequence
- ATGGCCGCAGAATACAAGTTGCATGAACACTCGAATAATAATTTTGACGAATACAGCAGTGACGCAGAcattaaattaggaaattttatagttcaaacgggagatttttttgattcaaaaacGGAAAAATCTTTGATAAGTGACGCCAACGTAGCACAAAGtgttttattggaaaatattaaagttgaaaattttgaCGAGCAGTTGAGCAAAGATATTGGTAGCGCTGAGAACTGTGAAAAATATAATGGTGACgcagacattaaattagaagattttatagttcaaacgggagattctcttgattcaaaagcaggaatatcCTTGATAAGCGACGACGCCGTAGCACAAAGTGTcttatcagaaaatattaaatttgaaaatgtgaaGGACGAAAGCGATAAAAACATTAAATGCAGATATGAACTAACAGCTCACAAGATCTCTCTTAAGCCCGACAAGGTTGCTGTTTGTGCGCAGTGTGGAAAATCGTTCGAAGGGAAAAACAAACTATATCAGCATTTTAGGAGGGTACATTTTACCAGGAAAGTTTACTCATGCACCTATTGTGGGCGATCATTTCGTCTCAAGACTGATCTGACGAGACATATTAGaaaacacactggtgaaaagccgtttacttgcaaaatttgtaaaaaaatattttctcagaaGAACGAACTGAGAAATCATATTCAaatacacaccggtgaaaagccttttacttgcgaaatttgtaaaaaatcattttctcggaaGGATGGACTGAAAACTCATATTAGGACCCACACTGGTGAAAAACCCTTcacttgcgaagtttgtaaaaaatcattttctcagAAGAACGAACTGAGAAATCATATTCAAATACATACCGGCGaaaggccttttacttgcgaaatttgtaaaaaatcattttctcggaaGGATGGACTGAAAATTCATATTAGGACCCACACTGGTGAAAAACCATTcacttgcgaagttttttttgttacttgGTTAAATTCTTTGATTGACTACGTAGAATTGCCTGTAGCTCCGAATGATGGTCAACAAATTAGCGATTTATACACACATTAA
- Protein Sequence
- MAAEYKLHEHSNNNFDEYSSDADIKLGNFIVQTGDFFDSKTEKSLISDANVAQSVLLENIKVENFDEQLSKDIGSAENCEKYNGDADIKLEDFIVQTGDSLDSKAGISLISDDAVAQSVLSENIKFENVKDESDKNIKCRYELTAHKISLKPDKVAVCAQCGKSFEGKNKLYQHFRRVHFTRKVYSCTYCGRSFRLKTDLTRHIRKHTGEKPFTCKICKKIFSQKNELRNHIQIHTGEKPFTCEICKKSFSRKDGLKTHIRTHTGEKPFTCEVCKKSFSQKNELRNHIQIHTGERPFTCEICKKSFSRKDGLKIHIRTHTGEKPFTCEVFFVTWLNSLIDYVELPVAPNDGQQISDLYTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627564;
- 90% Identity
- iTF_00627564;
- 80% Identity
- iTF_00627564;