Dtit012746.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:2555443-2556954[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.56 1.6e+03 0.9 0.3 19 43 243 268 237 276 0.75 2 6 0.00094 2.7 9.8 0.0 21 44 359 382 351 387 0.88 3 6 0.00079 2.3 10.1 0.3 21 49 387 415 383 419 0.91 4 6 0.42 1.2e+03 1.3 0.1 22 44 417 439 415 443 0.78 5 6 0.16 4.6e+02 2.7 0.0 22 45 445 468 441 473 0.86 6 6 0.00038 1.1 11.1 0.1 23 47 474 498 469 502 0.90
Sequence Information
- Coding Sequence
- ATGGCCACCGAATATGATAAGTTGCATAAACGTTACGATAATAATTACgaaaaatataatagtaatgcagacattaaattagattttatcgattcaaaagcaggaatatctttgataagtGACCACGACGTTGCACAAGGtgttttattggaaaatattaaagatgaacatttgaACGAGAAGTTAAACAAAGATGTTTGTAATAGTGAAAACTGTGAAAAATATAGTAGTGATGCACACATCAAATTGGAAGAATTTATAGTTAAAACGGAAGATTTTTGTGATTCAAAAACAGGAATATCATTGATAAGTGACGCCAACGTAGCACAAggtgttttattgaaaaatattaaagatgaaAATTTGGACAAACATTTAAGCAAAGATGTTGATAGTGGTGAATACTGGGAAGTtggtttagaaaaaatagacgTTACAAAGGTAGAAATATACGCGAATAATGAGAATATGCTAACGCCACAACAAGATCCGCTATTGCAAGATAACCAAAGCCACGCGAAATTGGAGTTGCGAGAGAATCCAATGCATACGTCTGGAAGAAAACGTAACAGTAGAATAGttttatgcaaaaaatgtaACAGAACGTTTagttatcgttattattatcgCGTTCACGTCCATATCCATGCTGGAAATACTCCATATAAATGTGACGTCTGCCACAAAGGTTTCGTATCACTAAGCGTccttaaaaaacataaaatttcgCATTCCGAGAGCAAACCGTATTCATGCAAGATTTGTGGGAAACGCTTCGCAAGGAGAAGGAATTGTACGTGGCATCAAATTATACATTCCGACAATAGACCTTTCCCTTGCGACCAatgcaataaaagttttaaatacaactataaACTGAAAGCCCACAAAGTCTCTCATAAGATCGACAAGATTGTTGTTTGTGCACAATGTGGAGAATTGTTCGAAGGGGAAAAGAACCTATACGATCATATTAAGAGCGTACATTCGGTTAGGAAGGTTCGCTTGTGTGGTTATTGTGGACGGACATTTTGTCGCACTGTAGATCTGAAGAATCATATTAgaacacacaccggtgaaaagcccttcacttgcgaaatttgtaagaaatcattttttCGAAGTAGTACACTAAAACGTCATATTTGGATACATACtggtgaaaggccttttacttgcgaaatttgtaaaaggTCGTTTCGTCAGAAGAGCGCAATGACGACTCATATTAAAACACAACACATCCGTGAAaaaccttttacttgcgaagtttgtaaaaagtccTTTTGCACGTACACCGAACTCATGAAACATATTAAAGTGCACACGGGTGAAAGGGCTTTTACTTGCGAGGTTTGTAAAGCGTCATTTAGCCGATCTTCCGGAGTGAAAACTCATATGGCGGTGCATATGGGGGATTGCCCTTATTCTTGCGAATTGTGTTCGGCTAAATTTAAGAGTTCATCAAATCTAACACGACATATGAACTTGCATATTAAACAAAAGATCTAA
- Protein Sequence
- MATEYDKLHKRYDNNYEKYNSNADIKLDFIDSKAGISLISDHDVAQGVLLENIKDEHLNEKLNKDVCNSENCEKYSSDAHIKLEEFIVKTEDFCDSKTGISLISDANVAQGVLLKNIKDENLDKHLSKDVDSGEYWEVGLEKIDVTKVEIYANNENMLTPQQDPLLQDNQSHAKLELRENPMHTSGRKRNSRIVLCKKCNRTFSYRYYYRVHVHIHAGNTPYKCDVCHKGFVSLSVLKKHKISHSESKPYSCKICGKRFARRRNCTWHQIIHSDNRPFPCDQCNKSFKYNYKLKAHKVSHKIDKIVVCAQCGELFEGEKNLYDHIKSVHSVRKVRLCGYCGRTFCRTVDLKNHIRTHTGEKPFTCEICKKSFFRSSTLKRHIWIHTGERPFTCEICKRSFRQKSAMTTHIKTQHIREKPFTCEVCKKSFCTYTELMKHIKVHTGERAFTCEVCKASFSRSSGVKTHMAVHMGDCPYSCELCSAKFKSSSNLTRHMNLHIKQKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626732;
- 90% Identity
- iTF_00626732;
- 80% Identity
- iTF_00627501;