Dtit012754.2
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:2589793-2591397[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.14 4e+02 2.9 0.1 21 45 167 191 163 198 0.78 2 13 0.094 2.7e+02 3.4 0.2 21 47 195 221 190 226 0.82 3 13 0.21 6e+02 2.3 0.5 21 31 223 233 210 250 0.83 4 13 0.0055 16 7.3 0.0 21 45 251 275 244 279 0.88 5 13 0.063 1.8e+02 4.0 0.0 21 45 279 303 275 310 0.84 6 13 0.8 2.3e+03 0.4 0.1 21 30 307 316 303 323 0.85 7 13 2.8 8.2e+03 -1.3 0.0 26 45 340 359 335 366 0.79 8 13 0.18 5.3e+02 2.5 0.0 21 44 363 386 357 391 0.80 9 13 0.06 1.7e+02 4.0 0.0 21 44 391 414 387 418 0.80 10 13 0.0062 18 7.2 0.0 21 46 419 444 414 450 0.86 11 13 0.068 2e+02 3.8 0.0 21 44 447 470 443 474 0.82 12 13 0.21 6e+02 2.3 0.0 21 46 475 500 471 504 0.90 13 13 0.0077 22 6.9 0.2 23 45 505 527 501 533 0.88
Sequence Information
- Coding Sequence
- ATGGCCACAGAATATGATGAGTTGCATGAACGTTATGATAATAACTGGGAAGAATATAATAATGACCCAGACCTTAAATTAGAAGATTCTATAGTTCAAACgggagattttcttgattcaaaagaAGGAATATCATTGATAAGTGATCAGAATGTAGCACAAGGTGtcttattggaaaatattaaagttgaaaactgtgaaaaatataatagtgACGCAGATATTAAATCGGAAGATTTTATAGTCCAAACaggagattttcttgattcaaaagcaggaatatcGTCGATAAGTGATTACAATGTAGCACAAGGAGCCTTACTGCGAAATATTAAACATGAAAATTCGAACGACCAATGCAATAACAGCTTTAAACACAAACAACTATATCGTCATATTAGGGGTATGCATCTGCTCAGGAAGATTCACATGTGTAGATATTGCGGGCGGACGTTTCGTCGCAAGGGCGATCTGACGGTACATACTAAAgtacacaccggtgaaaagccttttacttgcaaAGTTTGCAAAAGATCATTTCTAGCGAAGTCTACACTAATAAGACATATGAGAACGCACACTGGTGAAAAACCTTTTACTTGTGAAGTTTGTAAAAGGTCATTTAGTCACAAGTGTGTACTGAAGAAACATATTAGAATACATACCGGTGAAAAACCTTTTACTTGCGcgatttgtaaaaagtcatttccTGTGAAGAGTAGCTTGGTGACTCATATTAGaaaacacactggtgaaaagccttttacttgcgaggtttgtaaaaaatcatttcgtCAGAAGAGTGTATTGACAACTCATATTCaaacacacaccggtgaaagaccttttacttgcgaagtttgtaaaaagtcatttactGAGAAGAGTAACCTGATGACTCATGTTAGAAAACACACGGGTGAAAAACCTTTTACTtgtgaagtttgtaaaaagtcattttatGAGAAAATCGTATTAACGATTCACACTCAaatacacaccggtgaaaagcttTTTAATTGCGAGATATGTAAAACATCATATACTCAGAAGCATAAACTGACGATTCATATGAGAACGCACACCGGTGAAaaaccttttacttgcgaagtttgtaaaaagccGTTTGTTGGGAAGTACGTACTGAAGCGACATATTAGAACACACgctggtgaaaagccttttacttgtgagatttgtaaaaagtcgtATGCTGGGAAGCATGGACTGATGAGACATATGATaaaacacaccggtgaaaagccttttacttgcgagatctGTAAGAAGTCATTTAATGATAAGTGTGTACTGAAGAGACATATTAAAACGCACACCgatgaaaagccttttacttgcgaaatttgcAAAAGGTCATTTTCTCTGAAGGATGGACTAAGAGCCCACATTAAATATCACACCAGTGAAAAGCGTTTTGcttgtgaaatttgtaaaatgcaatttttccGCTCTGTATATGTAAAAAAACATATGGAAGTACATATGGGGGATTGCCCTTATTCTTGTCAGTTGTGTTCCGCTAAATTTAAGAAGTCGCACAGTCTAACACGGCATATGAAGCAGCATATTAAAAAGGAAGTATAA
- Protein Sequence
- MATEYDELHERYDNNWEEYNNDPDLKLEDSIVQTGDFLDSKEGISLISDQNVAQGVLLENIKVENCEKYNSDADIKSEDFIVQTGDFLDSKAGISSISDYNVAQGALLRNIKHENSNDQCNNSFKHKQLYRHIRGMHLLRKIHMCRYCGRTFRRKGDLTVHTKVHTGEKPFTCKVCKRSFLAKSTLIRHMRTHTGEKPFTCEVCKRSFSHKCVLKKHIRIHTGEKPFTCAICKKSFPVKSSLVTHIRKHTGEKPFTCEVCKKSFRQKSVLTTHIQTHTGERPFTCEVCKKSFTEKSNLMTHVRKHTGEKPFTCEVCKKSFYEKIVLTIHTQIHTGEKLFNCEICKTSYTQKHKLTIHMRTHTGEKPFTCEVCKKPFVGKYVLKRHIRTHAGEKPFTCEICKKSYAGKHGLMRHMIKHTGEKPFTCEICKKSFNDKCVLKRHIKTHTDEKPFTCEICKRSFSLKDGLRAHIKYHTSEKRFACEICKMQFFRSVYVKKHMEVHMGDCPYSCQLCSAKFKKSHSLTRHMKQHIKKEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626377;
- 90% Identity
- iTF_00627454;
- 80% Identity
- iTF_00627454;