Dtit012550.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:1028039-1029316[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.018 53 5.7 0.0 21 44 186 209 181 214 0.84 2 4 0.00056 1.6 10.5 0.1 18 48 211 241 207 244 0.91 3 4 0.072 2.1e+02 3.8 0.0 22 45 244 267 242 270 0.89 4 4 0.00061 1.8 10.4 0.0 23 46 273 296 267 299 0.90
Sequence Information
- Coding Sequence
- ATGGCCACAGAATATGATAAGTTACATGAACATTACGAAAATAACTTTAAAGAATATAGTAGTGACgcagacattaaattagaagattttacAGTTCAAACTGGAGACTTTCTTGATTCAAAAACgggaatatctttgataagcGACGCCAACGTATCACAAGGTGccgtattagaaaatattaaagtagaaaatttggGGGAGCAGTTAAGCAAAGATGGTAGTACTGAAAACTGTGAATCTGCTTTAGAAAAAATCGAAGTTCTAAAGGTGGAAATATGCACCGAAAATGAGAACGTGCCAATATTACAACAGGATCCGCTATTAGAAGATAACGAAACCCACATAAAGTTGGAACTAAATAAAGAATCAAGTTTAAAAAGGAATTCAACTCGTACATCTCGAAAAAATTGTATCAGTGATACGGTTTTGTGTAAAGAATGTAACAAAACGTTTGCTTCTCAATATTATTCGAGTGTCCATGTTCATATACATACTGGGAATACTCCATACGAATGCGACACTCACCTGGTAGCCCATACTAGGATACACACCGGTGAGAGGCCATTCACTTGTGAAATTTGTAAGAAATCATTTAGAGTGAAGGACGGACTGGTGCAACATATTAAAAGGCACagcggtgaaaagccttttacttgcgatgtttgtaaaaagtcatttccTGTGAGGGAGGAACTGAAGAGGCATATCAAAATTCAACATACCGTTGAGATGCCTTTTACctgcgaagtttgtaaaaagtccTTTGGCTTGTCTTCGATGCTAAAGAAACATATGAGCGTGCATATGGGGGATTGTCCTTATTCTTGTGAGATTTGTTCGGCTAAATTTAACCATTCAAGAAGTTTAAAATGGCATATGAAGCTGCATATTAAAGAAGAAGTCTAA
- Protein Sequence
- MATEYDKLHEHYENNFKEYSSDADIKLEDFTVQTGDFLDSKTGISLISDANVSQGAVLENIKVENLGEQLSKDGSTENCESALEKIEVLKVEICTENENVPILQQDPLLEDNETHIKLELNKESSLKRNSTRTSRKNCISDTVLCKECNKTFASQYYSSVHVHIHTGNTPYECDTHLVAHTRIHTGERPFTCEICKKSFRVKDGLVQHIKRHSGEKPFTCDVCKKSFPVREELKRHIKIQHTVEMPFTCEVCKKSFGLSSMLKKHMSVHMGDCPYSCEICSAKFNHSRSLKWHMKLHIKEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627730;
- 90% Identity
- iTF_00627730;
- 80% Identity
- iTF_00627730;