Dtit012651.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:1874279-1876054[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.34 9.7e+02 1.6 0.0 25 50 220 245 213 247 0.85 2 10 0.0096 28 6.6 0.0 17 45 269 297 255 300 0.84 3 10 0.0019 5.6 8.8 0.0 21 46 301 326 297 329 0.91 4 10 0.057 1.7e+02 4.1 0.0 20 52 329 361 325 363 0.88 5 10 0.23 6.5e+02 2.2 0.0 21 45 386 410 382 417 0.80 6 10 0.77 2.2e+03 0.5 0.1 21 31 414 424 411 445 0.81 7 10 0.87 2.5e+03 0.3 0.1 22 32 443 453 437 469 0.76 8 10 0.0018 5.2 8.9 0.0 21 46 470 495 465 499 0.91 9 10 0.063 1.8e+02 4.0 0.1 20 52 498 530 495 532 0.88 10 10 0.085 2.5e+02 3.5 0.0 21 44 555 578 551 587 0.74
Sequence Information
- Coding Sequence
- ATGGCCACAGAATATGATAAGTTCCATGAAAATTACGATAATAACTTTGAAGAATGTAATAGCGACACggacattaaattagaagactTTGCAGTTCAAACGGAAGGTCTTATTGATTCAAAAGCGAGAATATCTTTAATAAGCGACAACATCGTAGCACAAGGcatcttattaaaaaatattaaagttgaaaatctGCACGAGCAGTTAAGCAAAGATGTTGGTGGTACTGAGAACTGTGGAAAATATAATTGTGATGCAGATGTTAAATTAGAAGACTGTATAGTTCAAAGggaagattttcttgattcaaaaacGACATTACCTTTGTTGGATGACGAAATCGTAGCACAAGGTGTTTTATTGGAAAAcgttaaagttgaaaatttggaCGAGCAGTTAGGCAAAGATGGTAGTACTGAGAAGTgtggaaaatataatagtaacgcagacattaaattagaagattgtATAGTTGAAATGGAAGATTTTCTTGTTTCGAAGGCGGGATTATCTTTGGTAAGCGATAACATGGCAGCACAAGATGCCTTATTAGGAAATATTGAAGTTGAAAATTTGAATGATGAGTGCgataaaagttttaaatacaataagATACTGAAAGCTCATAAAGTCTCTTATAACATCGACAAGATTGCTGTTTGTGTGCAATGTGGAAAATCATTCGACGGGAAAAGGAAACTACATCGACATATTAAGGGTGTACATTTCAATAGCAAGGTGTACCCATGTAGTTATTGTGGGCGGACGTTTCGTTACAAGCCCGATCTGAGGAATCACATTAGCACACATACCGGTGAAAAACCCTTTACTTGtggaatttgtaaaaaatcattttgcaCTATGGTTCAACTGAAGAGACATGTTAAAACACATACCGGTGAAAAGCCATTCACctgcgagatttgtaaaaagtcatttactGAAAAGAGTGGACTGAGGAAACATATTGAAACACATGAAACAAGCGAAAAGTCATTTACTTGCGaactttgtaaaaaatcatttagtgTGGAAGATCGATTGAAGAGACATATGAGAACACATAGCCTTGGAaaaccttttacttgcgaagtttgtaaaaaatcattttcttggaagagtACATTGGAAATTCATATTAAAACGCACACTGGTGAAAAACCCTTTACTTGTGAGATGTGTAAAAGATCATTTTCTCAGAAGGGTGCATTGATAACTCATATGATAATACACACCGGCGAAAAGCCTTTTACCtgcaaagtttgtaaaaagtcattttctctGAAAGGTGTACTGGCGACTCATATGAAAACACACACTGGtaaaaagccttttacttgcgagatttgtaagaAGTCATTTTGTTGGAAGAAAGGACTAACatatcacattaaaacacacaccggtgaaaaaccttttacttgtgagatttgtaaaaagtcatttactGAGAAGAGTGGACTGAGGAAACATATTGAAACACATGAAACAAGTGAAAAGTCATTTACTTGCGaactttgtaaaaaatcattttgtgtAAACGATCGACTGAAGAGACATATGAGAACACATAGCCTTGGAAAACCTTTTACTTGTgatgtttgtaaaaaatcattttcttggaagagtGCATTGACGGCTCATTTTCAAACACACGCCGGTGAAAAGCCGtttacttgcgaagtttgtaaaaaatcattttctcggaaGAGTAGACTGAAGAGtcatattaaaaaacacactaGTGAAAAGAATTTTACCTGTAACGTTTGA
- Protein Sequence
- MATEYDKFHENYDNNFEECNSDTDIKLEDFAVQTEGLIDSKARISLISDNIVAQGILLKNIKVENLHEQLSKDVGGTENCGKYNCDADVKLEDCIVQREDFLDSKTTLPLLDDEIVAQGVLLENVKVENLDEQLGKDGSTEKCGKYNSNADIKLEDCIVEMEDFLVSKAGLSLVSDNMAAQDALLGNIEVENLNDECDKSFKYNKILKAHKVSYNIDKIAVCVQCGKSFDGKRKLHRHIKGVHFNSKVYPCSYCGRTFRYKPDLRNHISTHTGEKPFTCGICKKSFCTMVQLKRHVKTHTGEKPFTCEICKKSFTEKSGLRKHIETHETSEKSFTCELCKKSFSVEDRLKRHMRTHSLGKPFTCEVCKKSFSWKSTLEIHIKTHTGEKPFTCEMCKRSFSQKGALITHMIIHTGEKPFTCKVCKKSFSLKGVLATHMKTHTGKKPFTCEICKKSFCWKKGLTYHIKTHTGEKPFTCEICKKSFTEKSGLRKHIETHETSEKSFTCELCKKSFCVNDRLKRHMRTHSLGKPFTCDVCKKSFSWKSALTAHFQTHAGEKPFTCEVCKKSFSRKSRLKSHIKKHTSEKNFTCNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627449;
- 90% Identity
- iTF_00627449;
- 80% Identity
- iTF_00627449;