Dtit012760.2
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:2631783-2634260[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.14 4e+02 2.9 0.0 21 46 206 231 195 238 0.85 2 19 0.51 1.5e+03 1.1 0.1 21 40 234 253 227 265 0.72 3 19 0.36 1.1e+03 1.5 0.1 18 32 259 273 256 288 0.76 4 19 0.032 91 4.9 0.0 21 44 290 313 282 318 0.86 5 19 0.0072 21 7.0 0.0 21 44 318 341 313 346 0.89 6 19 0.1 2.9e+02 3.3 0.1 21 45 346 370 342 378 0.82 7 19 0.48 1.4e+03 1.1 0.0 21 46 374 399 369 407 0.83 8 19 0.37 1.1e+03 1.5 0.3 21 33 402 414 395 429 0.76 9 19 0.024 68 5.3 0.0 14 45 423 454 417 462 0.80 10 19 0.44 1.3e+03 1.3 0.0 21 46 458 483 448 489 0.81 11 19 0.11 3.3e+02 3.1 0.1 21 45 486 510 482 519 0.80 12 19 1.2 3.6e+03 -0.2 0.0 20 43 513 536 503 541 0.73 13 19 0.084 2.4e+02 3.6 0.0 18 45 567 594 560 603 0.87 14 19 0.027 79 5.1 0.0 21 52 626 657 622 658 0.89 15 19 0.071 2.1e+02 3.8 0.0 21 44 654 677 651 681 0.85 16 19 0.068 2e+02 3.9 0.0 21 44 682 705 675 712 0.87 17 19 3.6 1.1e+04 -1.7 0.0 22 45 739 762 735 768 0.84 18 19 0.98 2.9e+03 0.1 0.0 22 45 767 790 764 795 0.84 19 19 4.7 1.4e+04 -2.0 0.0 23 44 796 817 788 820 0.84
Sequence Information
- Coding Sequence
- ATGGCCACCGAATACGATAAGTTACATGAACATTACGATAATAACTGTGAAGAATATAATAGTGCCGCagatattaaattagaagattgtATAGTTCAAACggaagattttcttgattcaaaggAAGGAATATCTTTGAAAAGTGTCCACAACGTAACACAAAGTGtcttattggaaaatattaaagttgaaaatttagCTGAGCAGTTAAGCAAGGATGTTGTTAGTGCTGTGAActgtgaaaaatataatagtgatgcaaatattaaattaaaagattttatagTTCAAACGGGAGATTTCCTTGATTCAAAAGCGGGAATATCGTTGATAAGTGATACCAGCGAAGCACAAGGTGCcttattggaaaatattaaagttgaaaatttggaCGAGCTGTTAAACGGAGATGGTAGTACTGAAAACTATGAATTTGGTTTGGAAAAAGTAGAAACTCTAAGGGTAGAAATATGTACTAAATTCGAAAATCCGAACGATCAATACAATAATCCTATTAGGAGCGCGCATTTGCCCAAGAACAGCCACATGTGTAAACATTGCGGGCGGACGTTTCATCGCGAACCCGATCTGACGATACATATTCGAAcgcacactggtgaaaagccttttacgtGTGGGACATGTGCAAAGTCATTTTGTGCGAAGGATAAACTGAGGAAACATATTAGAACACACGCTGGTGAAaaaccttttacttgcgaagtttgCAAAAAGTCGTTTACTACGAAGCATACGCTGGCGATACATATTAGAagacacaccggtgaaaagccttttacttgcgaggtatgtaaaaaatcatttactcTAAAAAGTAAACTAACAACTCATATTAGaaaacacaccggtgaaaagccttttacttgcgagatttgtaacaAGTCATTTGCTGAGAAGGGTAACTTGACAACTCATATTAGAAAACACACCggcgaaaagccttttacttgcgaggtatgtaaaaaatcatttgccGAGAAGCGCAACTTGACAACTCATTTTAGaaaacacaccggtgaaaagccttttacttgcgaggttTGTAAAAAGTCGTTTTGTCAGAAGAATGAATTGACAGCTCATACTCaaacacacaccggtgaaaagccttttacatGTGAGACTTGTAACAAGTCATTTGGTGCGAAGAATAGACTGAAGAAACATATTAGAATACACACGggtgaaaggccttttacttgcgagatttgtaagaAGTCATTTTGTGGGAAGGATGGACTGAATAAACATATTAGAAAACACACCAgcgaaaagccttttacttgcgagttTTGTAACAAGTCATTTTGTGAGAAGGAGGGACTGAAGAAACATATTAGAAcgcacaccggtgaaaagccttttacatGTGAGACTTGTAACAAATCATTTGGTGCGAAGGATAAACTGAAGAAACATATTAGAATACACACcggtgaaaggccttttacttgcgagatttgtaacaAGTCTTTTTGTGGGAAGGATGGACTGAAGAAACATATTCAAACACACACCGATGAAAAGCCTTTCACTTGCGAGTTTTGTAAGAAGTCATTTTGTGAGAAGGACGGACTGACGAAACATATTAGAACACACACCGGCGAAAAGCTTTTTACTTGCGGGGTTTGTAAGAAGTCATTTACTAGTAAGAGTGGACTGACGATTCATATGGTAAGAcataccggtgaaaagccttttccttgcgaaatttgcaaaaagtcattttctcAGAAGAGCGGACTAAAAACTCACATTAAATATCACGCCGGTGAAAAGCATTTTTCTTGCGAAACTTGTAAAAAGTCGTTTACTGCCAAGCATACACTGATGAATCATATTAGAatacacactggtgaaaagccttttacttgcgaggtttgtaaaaagtcattttcttggaagtgtaATCTGATGAATCATATTAAAttacacaccggtgaaaagccttttacgtgcgatatttgtaaaaagtcatttgcTGAGAAGGATAGACTGAAGAAACATATTAgaacacacaccggtgaaaagccttttacttgcgaagtcTGTAAAATGTCATTTGCTGAGAAGAGCAACCTGACGACTCATATTAGAAAACACACCGGCGAAAAGCTTTTTACTTGCGGGGTTTGCAAGAAGTTGTTTACTGGTAAGAGTAAACTGACGATTCATATGGTaaaacacaccggtgaaaagcttTTTACTTGCGAACTTTGCAAAAAGTCGTTTTCTCAGAAGGGTGGACTAAAAGCTCACATTAAATGTCACGCCGGTGAAAAGCGTTTTActtgtgaaatttgcaaaatgtcATATTTCTCCTCTATAGATTTAAAAAGCCATATGGCGGTGCATATGGGGGATTGCCCTTATTCTTGTGAGTTGTGCTCCGCTAAATTTACGACTTTATCAAATCTAACACTCCATATGAAGCAACATATTAAAGAGGAAATTTAA
- Protein Sequence
- MATEYDKLHEHYDNNCEEYNSAADIKLEDCIVQTEDFLDSKEGISLKSVHNVTQSVLLENIKVENLAEQLSKDVVSAVNCEKYNSDANIKLKDFIVQTGDFLDSKAGISLISDTSEAQGALLENIKVENLDELLNGDGSTENYEFGLEKVETLRVEICTKFENPNDQYNNPIRSAHLPKNSHMCKHCGRTFHREPDLTIHIRTHTGEKPFTCGTCAKSFCAKDKLRKHIRTHAGEKPFTCEVCKKSFTTKHTLAIHIRRHTGEKPFTCEVCKKSFTLKSKLTTHIRKHTGEKPFTCEICNKSFAEKGNLTTHIRKHTGEKPFTCEVCKKSFAEKRNLTTHFRKHTGEKPFTCEVCKKSFCQKNELTAHTQTHTGEKPFTCETCNKSFGAKNRLKKHIRIHTGERPFTCEICKKSFCGKDGLNKHIRKHTSEKPFTCEFCNKSFCEKEGLKKHIRTHTGEKPFTCETCNKSFGAKDKLKKHIRIHTGERPFTCEICNKSFCGKDGLKKHIQTHTDEKPFTCEFCKKSFCEKDGLTKHIRTHTGEKLFTCGVCKKSFTSKSGLTIHMVRHTGEKPFPCEICKKSFSQKSGLKTHIKYHAGEKHFSCETCKKSFTAKHTLMNHIRIHTGEKPFTCEVCKKSFSWKCNLMNHIKLHTGEKPFTCDICKKSFAEKDRLKKHIRTHTGEKPFTCEVCKMSFAEKSNLTTHIRKHTGEKLFTCGVCKKLFTGKSKLTIHMVKHTGEKLFTCELCKKSFSQKGGLKAHIKCHAGEKRFTCEICKMSYFSSIDLKSHMAVHMGDCPYSCELCSAKFTTLSNLTLHMKQHIKEEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627429;
- 90% Identity
- iTF_00627429;
- 80% Identity
- iTF_00627429;