Dtit012755.2
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:2598139-2600346[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.042 1.2e+02 4.5 0.0 21 44 177 200 166 204 0.82 2 18 0.081 2.4e+02 3.6 0.0 20 44 204 228 194 236 0.74 3 18 0.13 3.7e+02 3.0 0.1 21 44 233 256 225 264 0.75 4 18 0.14 4.1e+02 2.8 0.0 20 39 260 279 250 287 0.73 5 18 0.3 8.7e+02 1.8 0.1 21 31 289 299 280 312 0.85 6 18 0.17 5e+02 2.5 0.0 21 41 317 337 307 345 0.76 7 18 0.054 1.6e+02 4.2 0.0 21 45 345 369 334 376 0.80 8 18 0.21 6.1e+02 2.3 0.0 21 35 373 387 369 399 0.74 9 18 0.12 3.5e+02 3.1 0.1 21 43 401 423 394 428 0.77 10 18 0.0078 23 6.9 0.0 20 46 428 454 418 461 0.82 11 18 0.14 4.2e+02 2.8 0.1 21 43 457 479 452 484 0.77 12 18 0.016 45 5.9 0.0 20 45 484 509 474 518 0.81 13 18 0.19 5.4e+02 2.4 0.1 21 45 564 588 553 597 0.78 14 18 1 2.9e+03 0.1 0.1 21 31 592 602 588 615 0.84 15 18 1.7 5.1e+03 -0.7 0.1 22 44 621 643 617 646 0.79 16 18 0.06 1.7e+02 4.0 0.1 21 44 648 671 640 674 0.81 17 18 0.0072 21 7.0 0.0 21 46 676 701 671 704 0.90 18 18 0.011 32 6.4 0.1 23 45 706 728 701 734 0.86
Sequence Information
- Coding Sequence
- ATGGCCTCAGAATATGATGAATTGCATGAAGATCACGATAATAACTGCGAAGAATATAATAGTGCCGCAGATATAGATTGTATAGTTCAAACGGgaaattttcttgattcaaaagcaggaatatctttgataaaaGACGACATCATAGCACAAGGTGTCTCATTgggaaacaaaattgaaaatttggatGAGCAATTAAGCAAGGATATGGTTAGTACTGAGAACTGTGAAACATATAATAGTGATGCagatattaaattagaagattttatAGTTCAAACAggggattttcttgattcaaaagcaggTATATCGTTGATAGGTGATCACAATGTAGCACAAGGTGCCATAtcggaaaatattaaggttgAAATTTCGAATGACCAATGCAATAAAAGCTTTAAACACAAACAACTATATCATCATATTGGGAGCGTACATTTGCCCAGGAAGATTCACATGTGTCGATATTGCGGGCGGACGTTTCGTCGCAAGACCAATCTAGAGGCACATACTAGAgcacacaccggtgaaaagccctTTACATGCGCaatttgcaaaaagtcattttctGAGAAGGGCGGACTAAAGAAGCATATTAGAACACACACCGGCGAAaaaccttttacttgcgaaatttgtaaaaagtcattttgtgGGAAAGATGTACTGAAGAAGCATATTAgaacacacaccggtgaaaagccttttacttgcgaaatttgtaaaaagccATTTTGTGGGAAGGATGGACTGAAGAaacatattaaaacacacaccggtgaaaagccttttacttgcgaaatttgtaaaaagtcattttctgaAAAGAGTAGCCTGACGACTCATATTAGaaaacacaccggtgaaaagccttttacttgcgaaatttgtaaaaaatcattttgtggAAAGAATGGACTGACGATACATATTAgaacacacaccggtgaaaagccttttacttgcgaaatttgtaaaaagtcattttgtgGGAAAGATGTACTGAAGAAGCATTTTAgaacacacaccggtgaaaagccttttacttgcgaaatttgtaaaaagtcattttgtgGGAAAGATGCACTGAAGAaacatattaaaacacacaccggtgaaaagcctttcacttgcgaaatttgtaaaaattcattttctgaAAAGGGTAGCCTGACGACTCATATTAGaaaacacaccggtgaaaagccttttacttgcgaaatttgtaaaaagtcattttgtgGGAAAGATGGACTGAAGAAACATATTAgaacacacaccggtgaaaagccttttacttgcgaaatttgtaaaaagtcttTTTCTGAAAAGGGCGGGCTGAGGAAGCATATAAgaacacacaccggtgaaaaaccttttacttgcgaaatttgtaaaaagtcattttgtgGGAAAGATGGACTGAAGAAACATATTAgaacacacaccggtgaaaagccttttacttgcgaaatttgtaaaaagtcttTTTTTGAGAAGAATAACCTGACGACTCATATTAGaaaacacactggtgaaaagccgTTTGCTCGCGAGATTTGTGAGGAGGATGAACTGAAGAAATATATTAGAACGCGCACTGGCGAAAAGCGTTTTACTTGCGATGTCTGTAAGAAGTCGTTTGCTGGTAAGAATGGATTGACAAATCATATGATaaaacacaccggtgaaaagccttttacttgcgaagtttgtaaaagGTCGTTTCTTGTGAAGTATGCACTGATGAGACATATTAgaacacacaccggtgaaaaacCGTATACTTGCGAGGTTTGTAAAAAGTCGTTTGCTGGTAGGAACGGACTGATGATTCATATGATAAAACACACCGGTGAAAGAcgttttacttgcgagatttgtaaaaagtcattttgtgAGAAGGATAGACTGAAGAAACATATTAgaacacacaccggtgaaaagccttttacttgcgagatttgtaaaaagtcattttgtgAGAAGGATAGACTGAAGAAACATATTAgaacacacaccggtgaaaagccttttacttgtaaagtttgtaaaatgcAATTTGGCCGCTCTGAAAAGGTAAAACGACATATGAAAGTGCATGTGGGGGATTGCCCTTATTCTTGTGAGTTGTGTTCCGCTAAATTTACAAGTTCGCCAAATCTAACACGCCATATGAAGCAGCATATTACAAAGAAGGTCTAA
- Protein Sequence
- MASEYDELHEDHDNNCEEYNSAADIDCIVQTGNFLDSKAGISLIKDDIIAQGVSLGNKIENLDEQLSKDMVSTENCETYNSDADIKLEDFIVQTGDFLDSKAGISLIGDHNVAQGAISENIKVEISNDQCNKSFKHKQLYHHIGSVHLPRKIHMCRYCGRTFRRKTNLEAHTRAHTGEKPFTCAICKKSFSEKGGLKKHIRTHTGEKPFTCEICKKSFCGKDVLKKHIRTHTGEKPFTCEICKKPFCGKDGLKKHIKTHTGEKPFTCEICKKSFSEKSSLTTHIRKHTGEKPFTCEICKKSFCGKNGLTIHIRTHTGEKPFTCEICKKSFCGKDVLKKHFRTHTGEKPFTCEICKKSFCGKDALKKHIKTHTGEKPFTCEICKNSFSEKGSLTTHIRKHTGEKPFTCEICKKSFCGKDGLKKHIRTHTGEKPFTCEICKKSFSEKGGLRKHIRTHTGEKPFTCEICKKSFCGKDGLKKHIRTHTGEKPFTCEICKKSFFEKNNLTTHIRKHTGEKPFAREICEEDELKKYIRTRTGEKRFTCDVCKKSFAGKNGLTNHMIKHTGEKPFTCEVCKRSFLVKYALMRHIRTHTGEKPYTCEVCKKSFAGRNGLMIHMIKHTGERRFTCEICKKSFCEKDRLKKHIRTHTGEKPFTCEICKKSFCEKDRLKKHIRTHTGEKPFTCKVCKMQFGRSEKVKRHMKVHVGDCPYSCELCSAKFTSSPNLTRHMKQHITKKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627430;
- 90% Identity
- iTF_00627430;
- 80% Identity
- iTF_00627430;