Dtit012719.2
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:2380812-2382374[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.24 6.8e+02 2.1 0.1 20 41 208 229 195 236 0.73 2 11 0.15 4.3e+02 2.8 0.1 21 43 237 259 233 264 0.78 3 11 0.13 3.9e+02 2.9 0.0 20 44 264 288 254 292 0.76 4 11 0.00072 2.1 10.2 0.0 21 52 293 324 289 326 0.90 5 11 0.11 3.2e+02 3.2 0.0 21 46 321 346 319 353 0.84 6 11 0.5 1.4e+03 1.1 0.0 20 44 348 372 337 379 0.78 7 11 0.73 2.1e+03 0.6 0.0 19 45 375 401 366 405 0.77 8 11 0.00084 2.4 10.0 0.0 21 52 405 436 403 437 0.89 9 11 0.038 1.1e+02 4.6 0.0 21 45 433 457 431 464 0.82 10 11 0.0016 4.7 9.1 0.0 20 45 460 485 449 489 0.81 11 11 0.00034 0.97 11.2 0.1 23 46 491 514 487 517 0.91
Sequence Information
- Coding Sequence
- ATGGCCGCAAAATATGATGAGTTGCGTGGACATTATGGCAATAACTGTGAAGAATATAATAGTAACgcagacattaaattagaagatttggTAATTCAAACAGGAGATTCTCTTGATTCAAAAGCGGGGATATCTTTAATAAGTGACGGCATCGTAGCACAAGGTGTCTTATCGGACAATATTAAAGTTGAAGATATGGATGAGCAGTTAAGCGATGATATTGGTGATAGTGAGaactgtaaaaaatataatagtgACGTAGAGACTAAGTTAGAAGATTGTACAGTTCAAACGGGAGATTCTCTTGATTCAAAAGCGGGGATATCTTTGATAAGCGACGACATCGTAGCACAAGGTGACTTATTGGAAAacattaaagttgaaaatttgaacGACGAATGCGACGAAAGCTATAAACACAAACGTATACTAAAAGCTCACAAGGTCTCTCATAAGCTCAACAAGAATGTTCTTTGTCCTAAATGTGGAAAATCGATCGAGAAGAAGAAACTATATCATCATATTAGGAGCGTGCATTGGTTCAGGAAGGTTCACATGTGTAGATTTTGCGGGCGGACGTTTCGTCACAAGGGCGATCTGAAGAAACATATTAcaacacacaccggtgaaaagccttttacttgcgaggtttgtaaaaagtcattttctcgGAAGACTGCACTGACaattcatattaaaatacacactGGTGAACAACCTTttgtttgtgaaatttgtaaaaagtcgttTTGTGGCAAGGATGGACTAAAGAAACATATTAgaacacacaccggtgaaaagccctTTACTTGCGAGgtatgtaaaaagtcattttctcgGAGGACTGCACTGAAAATTCATATTAAAGTGCACACTGGTGAacagccttttacttgcgaaatctgtaaaaaatcattttcttggaagtgcaaTCTGATGAATCATATTAAAttacacaccggtgaaaagcctttttcgtgcgagatttgtaaaaagtcattttgtgTGAAGGATGGACTAAGGAAACATATGAAAACACACACTGGCGAAAAGCCTTTTACATGTGAGACTTGCAAAAAGTCATTTTGTAGCAAGGATGGACTGAAGAAACATATTAGAACACACACCAGCGAAAAGCTttttacttgcgaagtttgtaaaaagtcattttctcgGGAGACTTCCTTGAAAATTCATATTAAAGTACATACTGGTGAacagccttttacttgcgaaatctgtaaaaaatcattttcttggaagtgtaATCTGATGAATCATATTAAAttacacaccggtgaaaagccgtttacttgcgagatttgtaaaatgtcattttgtGTGAAGGATGGACTAAGGAAACATACGAAAAcgcacaccggtgaaaagccttttacttgtgaaatttgcaaacagTCGTTTGGCCGGGCTTCAAGACTGAAAAGACATATGACAGTGCATATGGGGGATTGCCCTTATTCTTGTGAATTGTGTTCGGCTAAATATAAGAATTCACAAAATCTAACACGTCATATGAAGCTGCATGTTAAAGAGGAAATCTAA
- Protein Sequence
- MAAKYDELRGHYGNNCEEYNSNADIKLEDLVIQTGDSLDSKAGISLISDGIVAQGVLSDNIKVEDMDEQLSDDIGDSENCKKYNSDVETKLEDCTVQTGDSLDSKAGISLISDDIVAQGDLLENIKVENLNDECDESYKHKRILKAHKVSHKLNKNVLCPKCGKSIEKKKLYHHIRSVHWFRKVHMCRFCGRTFRHKGDLKKHITTHTGEKPFTCEVCKKSFSRKTALTIHIKIHTGEQPFVCEICKKSFCGKDGLKKHIRTHTGEKPFTCEVCKKSFSRRTALKIHIKVHTGEQPFTCEICKKSFSWKCNLMNHIKLHTGEKPFSCEICKKSFCVKDGLRKHMKTHTGEKPFTCETCKKSFCSKDGLKKHIRTHTSEKLFTCEVCKKSFSRETSLKIHIKVHTGEQPFTCEICKKSFSWKCNLMNHIKLHTGEKPFTCEICKMSFCVKDGLRKHTKTHTGEKPFTCEICKQSFGRASRLKRHMTVHMGDCPYSCELCSAKYKNSQNLTRHMKLHVKEEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627459;
- 90% Identity
- iTF_00627459;
- 80% Identity
- iTF_00627459;