Dhyl004573.1
Basic Information
- Insect
- Dynastes hyllus
- Gene Symbol
- -
- Assembly
- GCA_029619255.2
- Location
- JAROYC020000001.1:68321686-68325834[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.003 9.5 7.8 0.1 19 46 177 204 174 210 0.84 2 4 0.043 1.4e+02 4.1 0.1 21 46 207 232 199 240 0.78 3 4 0.0055 18 6.9 0.0 21 52 235 266 228 267 0.85 4 4 0.0015 4.9 8.7 0.0 21 43 263 285 259 291 0.90
Sequence Information
- Coding Sequence
- ATGCCTTTAGATACCACTGTTGTAGCAAGAATTGTAATATTGATACAAGATGGTCGAGGACAACGTGAATCTGCAAGAATTGTGCTGTGTACCAGCGCTTTGAGGAGACGCCTAATAACCAGAAAACCAGGATCCGGGCGAAAAAGAGTCACCACCCCAAGAGATGGCCGTTTTTTGGTGTCTGCAAGTTTGCGGAATAGAACAGCAGCTACGGTTTTGCTGCGAAATCAACTCCAAGAAATTAGAGATGTGGATGTTAGTGAATGGATCGTTAGAGGAAGGCGTCGTGCTGCTGGATTGTCTTACAGAAATATGGCTACAGGTCCGTCATTGCAACGCCGGCATCGAATTGCAAGATTGGCTTTTGCCCGAAATCACTTGGCATGGAATAATGAGGTCTTGAGCAAGACGGACGTCGGCGAGTATAGAGAAGTCCAGGAGAAAGATATGCTGCAGTTTGTATTGACGAGCGACTTCCATTTGGCGGTGGGTCGGTTATGGTTTGGACAGCAATCTCTTCACATTCACGTACAGAGTGCGCGTCCATTCGTTTGTCCTGTTTGTAATCATGGATTTACAACGTCAAGTTCTTTAACGAAACATAAAAGAATCCACTCAGGAGAGAAGCCTTACGAATGCGATGTTTGTCATATGCGATTTTCTAGATCGGGTATATTGGCGAGACATAAACGAACGCACACGGGTGAGAAGCCATACGTTTGCAACTATTGCGGAAAAGCGTTTTCCCAATCCAACGATCTGAGTTCACATTTGCGAATACATACCGGCGAAAAACCTTTTGTTTGTGATATGTGCGGTTCAGCGTTTAGGCAAAGTTCTGCTTTAAAGACTCATAAAAAGACGCACGCCGATAGAAACCCAATTATAGACTCCAAAGTGATGATACTAGATTCGAAAGTGATGATGGGCATGGTACAACATCCGACATTTTTAGGAAATTTACAGTAG
- Protein Sequence
- MPLDTTVVARIVILIQDGRGQRESARIVLCTSALRRRLITRKPGSGRKRVTTPRDGRFLVSASLRNRTAATVLLRNQLQEIRDVDVSEWIVRGRRRAAGLSYRNMATGPSLQRRHRIARLAFARNHLAWNNEVLSKTDVGEYREVQEKDMLQFVLTSDFHLAVGRLWFGQQSLHIHVQSARPFVCPVCNHGFTTSSSLTKHKRIHSGEKPYECDVCHMRFSRSGILARHKRTHTGEKPYVCNYCGKAFSQSNDLSSHLRIHTGEKPFVCDMCGSAFRQSSALKTHKKTHADRNPIIDSKVMILDSKVMMGMVQHPTFLGNLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626570;
- 90% Identity
- iTF_00626570;
- 80% Identity
- iTF_00626570;