Dhyl010647.1
Basic Information
- Insect
- Dynastes hyllus
- Gene Symbol
- -
- Assembly
- GCA_029619255.2
- Location
- JAROYC020000003.1:1112830-1114343[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.5 4.9e+03 -0.9 0.1 22 31 211 220 204 231 0.81 2 9 0.0073 23 6.6 0.0 21 52 237 268 231 268 0.85 3 9 0.034 1.1e+02 4.4 0.2 20 31 264 275 262 291 0.82 4 9 0.27 8.8e+02 1.5 0.0 22 46 294 318 289 324 0.84 5 9 0.44 1.4e+03 0.9 0.1 23 43 323 343 319 348 0.72 6 9 0.016 50 5.5 0.0 21 46 349 374 335 381 0.85 7 9 0.23 7.5e+02 1.7 0.0 21 45 377 401 374 408 0.83 8 9 0.067 2.2e+02 3.5 0.0 21 44 405 428 397 432 0.82 9 9 0.01 33 6.1 0.1 21 48 433 460 428 464 0.80
Sequence Information
- Coding Sequence
- ATGGCTACAGAATATGATGAATTGCATCaacattacaataataacaTTGAAGAATATAGTAGTGATGCAGAcattaaattaggaaattttaTAGTTCAAAAGGGAGATTTTCCTGATTCAAAATCGGGAATATCTTTGATAAATGACGCCCACGTAACTCAAAGTGTCTTactggaaaatattaaagttgaaaattttgacGAGCACTTAAGTAAAGATATTGGCGATACTgagaaatgtgaaaaatataatagtgacgcgaacattaaattagaagactTTATAGTTCAAACGGGAGATTCtcttgattcaaaagcaggaatatctttgataagcgACGACATCGTAGCACAAGGTGTCTTactggaaaatattaaagttgaaaatttgaacGACCAAAGCGATAAAAACTTTCAATGCAAACATGAACTTACAGCTCAGAAGGTCCCTCATAAGCCCAATAAGATTGCTGTCTGTGTGCAGTGTGGAAAATCGTTCGCAGAGAAATACAAACTGTATCAACATTTTAGGAGCGTACATTTTACCAGGAAAGTTCACTTATGTAGTTATTGTGGATGGGCATATCATCGTAAAATTGATCTGATGAGACATATTAGAAAACATACTGGTAAAAAGCCCTATACTTGCgaggtttgtaaaaagtcattttctaaGAGTGGACTGACGATTCATACTAAaaaacacaccggtgaaaagccttttacttgcggaATTTGTAAGGAATCGTTTTCTTGGAATAATGGACTCAGGTTTCATATGAAAATACACAGTAgcgaaaagccttttacttgtgaaATTTGTAAAGAATCATTTTGTTTGATGAAAGGACTTATCGAACATATTAAAACACAccccggtgaaaagccttttacttgcgaagcttgtaaaaaatcattttcttggataAGTGCACTGAGGAGTCATATGAAAATACACACCGGTAAAAGGCCCTTTACTTGCAAGATATGTAAAAGGACATTTTCCGAGAAAGGTAGACTGACGTctcatattaaaatacacactggtgaaaagccttttacttgcgaagtcTGTAAAAAGTCATTCTCTCGGAAGACTGGACTGAGAACTCATATGAaaacacacaccggtgaaaagccttttggttgcgagatttgtaaaaagtcattttctcaGAAGGGTGGATTGACGAATCATATTAGAACccacactggtgaaaagccgTTTACTTGCgatgtttgtaaaaaatcattttctcagAAGGATGGACTGATAAATCATATGAGAACACATACTGGTGAAAGGCCTTTTACTTgtgaagtttgtaaaatgtcGTTTCATCAAAAGAAGAGCGGATTGAATCGACATATTAAAACACACTTTAGTGGAAAACGTCTTACTGCGAAGGTTGCAAAAAGTCATTTGGCTGCTCTTCAGGAATAA
- Protein Sequence
- MATEYDELHQHYNNNIEEYSSDADIKLGNFIVQKGDFPDSKSGISLINDAHVTQSVLLENIKVENFDEHLSKDIGDTEKCEKYNSDANIKLEDFIVQTGDSLDSKAGISLISDDIVAQGVLLENIKVENLNDQSDKNFQCKHELTAQKVPHKPNKIAVCVQCGKSFAEKYKLYQHFRSVHFTRKVHLCSYCGWAYHRKIDLMRHIRKHTGKKPYTCEVCKKSFSKSGLTIHTKKHTGEKPFTCGICKESFSWNNGLRFHMKIHSSEKPFTCEICKESFCLMKGLIEHIKTHPGEKPFTCEACKKSFSWISALRSHMKIHTGKRPFTCKICKRTFSEKGRLTSHIKIHTGEKPFTCEVCKKSFSRKTGLRTHMKTHTGEKPFGCEICKKSFSQKGGLTNHIRTHTGEKPFTCDVCKKSFSQKDGLINHMRTHTGERPFTCEVCKMSFHQKKSGLNRHIKTHFSGKRLTAKVAKSHLAALQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626411;
- 90% Identity
- iTF_00626411;
- 80% Identity
- iTF_00626411;