Dhyl025604.2
Basic Information
- Insect
- Dynastes hyllus
- Gene Symbol
- -
- Assembly
- GCA_029619255.2
- Location
- JAROYC020000007.1:1256307-1258523[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 6.5e+03 -1.3 0.0 26 48 151 173 148 178 0.83 2 20 0.13 4.2e+02 2.5 0.0 21 52 175 206 169 208 0.82 3 20 0.79 2.6e+03 0.0 0.0 21 46 203 228 200 235 0.76 4 20 0.17 5.5e+02 2.2 0.0 21 45 231 255 226 258 0.76 5 20 0.077 2.5e+02 3.3 0.1 21 44 259 282 257 286 0.80 6 20 0.32 1e+03 1.3 0.2 21 30 287 296 283 302 0.87 7 20 0.0074 24 6.5 0.0 21 47 315 341 310 348 0.85 8 20 2 6.4e+03 -1.3 0.0 21 31 343 353 340 369 0.79 9 20 0.032 1e+02 4.5 0.0 21 44 371 394 366 398 0.90 10 20 0.033 1.1e+02 4.5 0.2 20 31 398 409 392 426 0.81 11 20 4.3 1.4e+04 -2.3 0.0 22 43 428 449 422 454 0.71 12 20 0.15 4.7e+02 2.4 0.0 21 44 455 478 437 487 0.84 13 20 0.2 6.5e+02 1.9 0.1 21 32 511 522 507 537 0.76 14 20 0.18 5.9e+02 2.1 0.1 21 31 539 549 528 566 0.80 15 20 0.23 7.4e+02 1.8 0.1 21 31 567 577 563 594 0.80 16 20 0.0063 20 6.8 0.0 21 45 595 619 587 622 0.85 17 20 0.73 2.4e+03 0.1 0.1 21 31 623 633 619 649 0.80 18 20 0.32 1e+03 1.3 0.1 21 43 651 673 644 677 0.76 19 20 0.085 2.7e+02 3.1 0.0 21 45 679 703 671 707 0.85 20 20 0.005 16 7.1 0.1 23 46 709 732 705 736 0.90
Sequence Information
- Coding Sequence
- ATGGCCACAGAATATGATGCGTCGCATGAACATAACGATAATAACTATGAAAACTGTAATAGTGATgcagacattaaattagaagattttatAGTTCAAACTGGAGATTCTTTTGATTCAAAAGCGGGAATATCTTTAATAGGCGACGATGTCGTAGCGCAACGTGTCccattggaaaatattaaagttgacaaTTTGAACGACCAATGCAATAAAAGTTTCGAACACAAAGATATACTACAATCTCACAAGGTCTCTCATATGCTCGACAAGAACGTTTCTTGTCCTCACTGTGGAGAATCGTTCGAAGAGGAAGCGAAACTATATCATCATGCTAGGAGCGCGCATTCGCTCAGGAAGATTCACATGTGTAGATTTTGCAGGCGGACGTTTCGTCGCAAGGACCAACTGACGGTACATACTATAACACACACCGGTAAAAAGCTCTTTACTtgcaaaatttgtgaaaaatcatATACTCTGAAAGCTGGACTGAGAATTCATATTAAAACACAACACACTGATGAAAAGCCTTTTGCTTgtgaaatatgtaaaaagtcattttcttaTAAGACTCAACTGaccaaacatattaaaatacacagcggtgaaaagccttttatttGCAAGATATGTAAAAAATCATATCCTCAGAGGTATAGACTAGTGATTCATATGAGaatacacaccggtgaaaaaccttttacttgcgaagtttgtaaaaaatcatttgctCTGAAGATTAGACTGATGAGACATGTTAAAATACACAcaggtgaaaagccttttacttgcgagatttgtaaaaaatcatattcTCAGAAGGTTAAACTGACGATTCACATGAGAACACACAcgggtgaaaagccttttacttgcgcgATATGTGGAAAGTCATTTACTGTGAAGCTGGGACTGATTCTTCATATTAGaacacacactggtgaaaaaccttttacttgcgagatatGTGAAAAGTCATTTCATCAGCAGACTGGACTGAAAGttcatattaaaacacacaccggtgaaaagccttttacttgcgaattttgtaaaaagtcatttgcTCTGAAGACTAGTCTGATGGCACATGTTAGAAtacacactggtgaaaagcccTTTACTTGCGAGGTGTGTAAAAAATCGTTTACTACGAAGGGTGAACTGAGAAAACATATTCGAACACACTCtagtgaaaagccttttacttgcgagatatGTAAAAAATCGTTTGCTGCGAAAGTGGGACTGAATCTTCATATTAgaacacacaccggtgaaaagtcTTTTACTTGCGAGGTTTGTAAAAAGTCCTTTCTTCGGAAAGGTGACTTGAAGATGCACATTAGAGGACACatcggtgaaaagccttttacttgcgaagtttgtaaaatgtcGTTTCTTCAGAAGGGTGTATTGAAGGTGCACTTTAGAAAACACACCGGTGAGAAGCCTTTTtcttgcgaagtttgtaaaaaatcatttgctCTGAAGACTGGTCTGATGGTACATGTTAGAAtacacactggtgaaaagccttttacttgcgaaatttgtaaagaATCATATTCTCGGAAGGCTAAACTGACGATTCACATGAGAACACACAcgggtgaaaagccttttacttgcgagatatgtaaaaagtcatttgcTGCGAAAGTGAGACTGATTCTTCATATTAGaacacacactggtgaaaaaccttttacttgcgagatatGTAAAAAGTCGTTTGCTGCGAAAGTGAGACTGATTCCTCATATTAgaacacacaccggtgaaaaaccttttacttgcgagatatgtaaaaagtcatttcAGCAGCAGAGTGGACTGAAAGttcatattaaaacacacaccggtgaaaggccttttacttgcgaggtttgtaaaaagtcatttattGCGAAGTCTGCACTGATGAGTCATACTAGGgtacacaccggtgaaaagccttttacttgcgaggttTGTAAAAAGTCGTTTCCTCGGAAGAATGAATTGAAGGTGCACTTTAgaacacacaccggtgaaaaaccttttacttgcgaagtttgtaaaatgtcatttgGCGGCTCTGTTAGGCTAAAAACTCATATGGCAGTGCATATGGGGGATTGCCCTTATTCTTGTGAGTTCTGTTCCGCTAAATTTACAAGTTCACCAAATCTAACGCGGCATATGAAGCTGCATATTAAAAAGGAAGTCTGA
- Protein Sequence
- MATEYDASHEHNDNNYENCNSDADIKLEDFIVQTGDSFDSKAGISLIGDDVVAQRVPLENIKVDNLNDQCNKSFEHKDILQSHKVSHMLDKNVSCPHCGESFEEEAKLYHHARSAHSLRKIHMCRFCRRTFRRKDQLTVHTITHTGKKLFTCKICEKSYTLKAGLRIHIKTQHTDEKPFACEICKKSFSYKTQLTKHIKIHSGEKPFICKICKKSYPQRYRLVIHMRIHTGEKPFTCEVCKKSFALKIRLMRHVKIHTGEKPFTCEICKKSYSQKVKLTIHMRTHTGEKPFTCAICGKSFTVKLGLILHIRTHTGEKPFTCEICEKSFHQQTGLKVHIKTHTGEKPFTCEFCKKSFALKTSLMAHVRIHTGEKPFTCEVCKKSFTTKGELRKHIRTHSSEKPFTCEICKKSFAAKVGLNLHIRTHTGEKSFTCEVCKKSFLRKGDLKMHIRGHIGEKPFTCEVCKMSFLQKGVLKVHFRKHTGEKPFSCEVCKKSFALKTGLMVHVRIHTGEKPFTCEICKESYSRKAKLTIHMRTHTGEKPFTCEICKKSFAAKVRLILHIRTHTGEKPFTCEICKKSFAAKVRLIPHIRTHTGEKPFTCEICKKSFQQQSGLKVHIKTHTGERPFTCEVCKKSFIAKSALMSHTRVHTGEKPFTCEVCKKSFPRKNELKVHFRTHTGEKPFTCEVCKMSFGGSVRLKTHMAVHMGDCPYSCEFCSAKFTSSPNLTRHMKLHIKKEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626363;
- 90% Identity
- iTF_00626363;
- 80% Identity
- iTF_00626363;