Dhyl010721.2
Basic Information
- Insect
- Dynastes hyllus
- Gene Symbol
- -
- Assembly
- GCA_029619255.2
- Location
- JAROYC020000003.1:1710353-1711795[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00072 2.3 9.8 0.2 18 45 222 249 209 258 0.84 2 9 0.51 1.6e+03 0.6 0.0 22 52 254 284 249 285 0.84 3 9 0.0081 26 6.4 0.0 21 45 281 305 270 312 0.82 4 9 0.22 7e+02 1.8 0.0 21 43 309 331 305 337 0.73 5 9 0.0043 14 7.3 0.0 21 52 337 368 332 369 0.87 6 9 0.2 6.5e+02 1.9 0.1 22 43 366 387 362 396 0.69 7 9 0.52 1.7e+03 0.6 0.1 21 31 393 403 389 419 0.83 8 9 0.00016 0.53 11.8 0.0 21 46 421 446 411 453 0.90 9 9 4.3 1.4e+04 -2.3 0.0 24 44 452 472 450 475 0.83
Sequence Information
- Coding Sequence
- ATGGCCATAGAATATGATGAGTTGTATGAACATTACGATAATAACTGTGAGGAATATAATAGCAACCCAGACGTTAAATTAGAAGATGTTTTAATTCAAACGGGAGATTTTCGtgattcaaaagcaggaatatgTTTGATAAGCGACCATAACGTAACACAAAGAGtcttattggaaaatattaagattGAAAATTTGGATGAGCAGTTAAATAAAGATGTTAGCAGTATTGAAAATGTTGAAGAATATAATAGTGACACggacattaaattagaagattttacAGTTCATACAGGacattttcttgattcaaaagcaggaatatcttTGATGAGCGATGGCATTGTAGCACAAGGTGTCATcctggaaaatattaaaactgaaaattttaacgacCGATGCCATAAAAGTTTTGAACATAAACTAGGTGCTGACAAGGTCTCTCATAAGCTTGATGAGAATGTTTTTTGTCCTCAATGTAGAATATCGTTCAAGAAGGAGGAACTATATCATCATATCAAGAATGTGCATTGGTTCAGCAAGATTCAAATGTGTAGATATTGTGGGCGGACGTTTCATCACAAGGCTGATCTGACAATACATATTAgaacacacaccggtgaaaagcccaTCACCAGCCCGCACCTGAAGAAACATATCACAACACACGCCAGTGAagagccttttacttgcgagatttgtaaaaaatcattttgtgaGGAAGCTAGACTGAAGAGacatattaaaacacacaccGATGAAAAGTCTTTTGCTTGCGAAGtttgcaaaaagttattttgtCGCAAGGATGGACTGAAGAAACATCTAAGGACACACACCAtcgaaaagccttttacttgtgaaatttgtaaaaagtcattttctcaGGAAAATGAACTGGTAACtcatattaaaaaacacactggtgaaaagccaTTTACttgtgaagtttgtaaaaagtcatttactGCGAAGCATGCACTGATGAATCATTTTAGaatacacaccggtgaaaagccttttacttgcgaaatcTGCAACAAGTCGTTTAGTGAGAAGTGCGGACTGACGAGACATATTAAAATACACTCCGGtaaaaagccttttacttgtgaaatttgtaaaaaggcATTTTCTCGGAAGAGTGGACTATATAGTCATATTAAATgtcacaccggtgaaaagcctttcaCTTGTGAGGTTTGTAAAAAGTCGTTTTCTTGGAAGAGTGGACTGACATGTCATATGAgaacacacaccggtgaaaagcctttcacttgtgaagtttgtaaaaaatcatttggtTTCTCTAGAAGGCTAAGAAAACACATGGCAATGCATATGGGGTATTGCCCTCATTCTTGTGAGTTCTGTTCGGCCAAATTTACGAGTTTATCAAATTTAACGCTGCATATGAAGCAGCATATTAAAGAGGAAGTCTAA
- Protein Sequence
- MAIEYDELYEHYDNNCEEYNSNPDVKLEDVLIQTGDFRDSKAGICLISDHNVTQRVLLENIKIENLDEQLNKDVSSIENVEEYNSDTDIKLEDFTVHTGHFLDSKAGISLMSDGIVAQGVILENIKTENFNDRCHKSFEHKLGADKVSHKLDENVFCPQCRISFKKEELYHHIKNVHWFSKIQMCRYCGRTFHHKADLTIHIRTHTGEKPITSPHLKKHITTHASEEPFTCEICKKSFCEEARLKRHIKTHTDEKSFACEVCKKLFCRKDGLKKHLRTHTIEKPFTCEICKKSFSQENELVTHIKKHTGEKPFTCEVCKKSFTAKHALMNHFRIHTGEKPFTCEICNKSFSEKCGLTRHIKIHSGKKPFTCEICKKAFSRKSGLYSHIKCHTGEKPFTCEVCKKSFSWKSGLTCHMRTHTGEKPFTCEVCKKSFGFSRRLRKHMAMHMGYCPHSCEFCSAKFTSLSNLTLHMKQHIKEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626423;
- 90% Identity
- iTF_00626423;
- 80% Identity
- iTF_00626423;