Dhyl010752.2
Basic Information
- Insect
- Dynastes hyllus
- Gene Symbol
- -
- Assembly
- GCA_029619255.2
- Location
- JAROYC020000003.1:1921186-1922832[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.049 1.6e+02 3.9 0.1 21 44 181 204 177 209 0.78 2 13 0.061 2e+02 3.6 0.2 21 48 209 236 203 241 0.82 3 13 0.16 5e+02 2.3 0.2 21 31 237 247 233 264 0.83 4 13 0.0049 16 7.1 0.0 21 44 265 288 259 291 0.88 5 13 0.049 1.6e+02 3.9 0.0 21 45 293 317 289 324 0.84 6 13 0.63 2e+03 0.3 0.1 21 30 321 330 317 336 0.85 7 13 1.9 6.2e+03 -1.2 0.0 26 45 354 373 349 382 0.79 8 13 0.14 4.4e+02 2.5 0.0 21 44 377 400 369 405 0.81 9 13 0.046 1.5e+02 4.0 0.0 21 44 405 428 401 432 0.80 10 13 0.0048 15 7.1 0.0 21 46 433 458 428 464 0.86 11 13 0.039 1.3e+02 4.2 0.0 21 45 461 485 457 492 0.83 12 13 0.17 5.3e+02 2.2 0.0 21 46 489 514 485 517 0.90 13 13 0.0061 20 6.8 0.1 23 45 519 541 515 547 0.88
Sequence Information
- Coding Sequence
- ATGGCCACAGAATATGATGAGTTGCATGAACGTTACGATAATAACTGGGAAGAATATAATAATGACccagacattaaattagaagattttatagttcaaacgggagattttcttgattcaaaagaaggaatatctttgataagtGATCAGAATGTAGCACAAGGTGccttattgaaaattttaaaaattgaaaatttggatGAGCAATTAAGCAAGGATATTGTTGGTACTGAAAActgtgaaaaatataatagtgaCGCAGATATTAAATCGGAAGATTTTATAGTCCAAACaggagattttcttgattcaaaagcaggaatatcgTCGATAAGTGATTACCATGTAGCACAAGGTGCgttattggaaaatattaaacatgAAAATTCGAACGACCATTGCAATAACAGCTTTAAACACAAACAACTATATCGTCATATTAGGGGTATGCATCTGCTCAGGAAGATCCACAGGTGTAGATATTGCGGGCGGACGTTTCGTCGCAAGGGCGATTTGACGGTACATACTAAAgtacacaccggtgaaaagccttttacttgcaaaatttgtaaaaggtcATTTCTAGCGAAGTCTACACTAATAAGACATATGAGAACGCACACTGgtgaaaaaccttttacttgTGAAGTTTGTAAAAGGTCATTTAGTCACAAGTGTGTACTGAAGAAACATATTAGAATACATACCGgtgaaaaaccttttacttgcgcgatttgtaaaaagtcatttccTGTGAAGAGTAGCTTGGTGACTCATATTAGAaaacacactggtgaaaagccttttacttgcgaggtttgtaaaaagtcatttcgTCAGAAGAGTGTATTGACAACTCATATTCaaacacacaccggtgaaagaccttttacttgcgaagtttgtaaaaagtcatttactGAGAAGAGTAACCTGATGACTCATGTTAGAAAACACACGGgtgaaaaaccttttacttgtgaagtttgtaaaaagtcattttatGAGAAAATCGTATTAACGATTCACACTCAaatacacaccggtgaaaagcttTTTAATTGCGAGATATGTAAAACATCATATACTCAGAAGCATAAACTGACGATTCATATGAGAACgcacactggtgaaaagccttttacttgcgaagtttgtaaaaagccGTTTGTTGGGAAGTACGTACTGAAGCGACATATTAGAACACACgctggtgaaaagccttttacttgtgagatttgtaaaaagtcgtATGCTGGGAAGCATGGACTGATGAGGCATATGATAaaacacactggtgaaaagccttttacttgcgagatctgtaaaaagtcatttaatGATAAGTGTGTACTGAAGAGACATATTAAAACGCACACCgatgaaaagccttttacttgcgaaatttgcaaaaagtcattttctcTGAAGGATGGACTAAGAGCCCACATTAAATATCACACCAGTGAAAAGCGTTTTGCttgtgaaatttgtaaaatgcaatttttccGCTCTGTATATGTAAAAAAACATATGGAAGTACATATGGGGGATTGCCCTTATTCTTGTGAGTTGTGTTCCGCTAAATTTAAGAAGTCGCACAGTCTAACACGGCATATGAAGCAGCATATTAAAAAGGAAGTCTAA
- Protein Sequence
- MATEYDELHERYDNNWEEYNNDPDIKLEDFIVQTGDFLDSKEGISLISDQNVAQGALLKILKIENLDEQLSKDIVGTENCEKYNSDADIKSEDFIVQTGDFLDSKAGISSISDYHVAQGALLENIKHENSNDHCNNSFKHKQLYRHIRGMHLLRKIHRCRYCGRTFRRKGDLTVHTKVHTGEKPFTCKICKRSFLAKSTLIRHMRTHTGEKPFTCEVCKRSFSHKCVLKKHIRIHTGEKPFTCAICKKSFPVKSSLVTHIRKHTGEKPFTCEVCKKSFRQKSVLTTHIQTHTGERPFTCEVCKKSFTEKSNLMTHVRKHTGEKPFTCEVCKKSFYEKIVLTIHTQIHTGEKLFNCEICKTSYTQKHKLTIHMRTHTGEKPFTCEVCKKPFVGKYVLKRHIRTHAGEKPFTCEICKKSYAGKHGLMRHMIKHTGEKPFTCEICKKSFNDKCVLKRHIKTHTDEKPFTCEICKKSFSLKDGLRAHIKYHTSEKRFACEICKMQFFRSVYVKKHMEVHMGDCPYSCELCSAKFKKSHSLTRHMKQHIKKEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626377;
- 90% Identity
- iTF_00627454;
- 80% Identity
- iTF_00626377;