Dhyl004287.1
Basic Information
- Insect
- Dynastes hyllus
- Gene Symbol
- -
- Assembly
- GCA_029619255.2
- Location
- JAROYC020000001.1:64043999-64049290[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.1e-05 0.1 14.1 0.1 18 43 3 28 1 32 0.90 2 3 0.0042 13 7.3 0.2 20 45 33 58 29 67 0.78 3 3 3.1e-06 0.01 17.4 0.3 21 52 90 121 83 122 0.93
Sequence Information
- Coding Sequence
- atgcGCAGACATACGGACGAGCGACCATACGTCTGTGATATATGCGGCATGGCTTTTAGACAGTCTACAGATATGAGGACCCACAGAAGAACACACACCGGCGAAAAGCCTGCTCTGTGTACTATATGCGGGAAGAGATTCGCATCGTCAAGTCAATTAAATATTCACATACGCACACATACCGGTGAAAAGCCATTTCTTTGTGCGAGTTGTTCAAAATCGTTCGCAACGAGGGATATGCTGATTAAACATGAAAGGATTCACACAGGCGAGAGACCGTACgcttgtaaaatttgtttgaaagcGTTCAACCAAAGTAGTACATTGAAGACTCATCTAAATACGCACAAACAGGCGAAACCTCCTGATCCAAGCAAGGAGAATGACTCGATTTAA
- Protein Sequence
- MRRHTDERPYVCDICGMAFRQSTDMRTHRRTHTGEKPALCTICGKRFASSSQLNIHIRTHTGEKPFLCASCSKSFATRDMLIKHERIHTGERPYACKICLKAFNQSSTLKTHLNTHKQAKPPDPSKENDSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626544;
- 90% Identity
- iTF_00626544;
- 80% Identity
- iTF_00626544;