Dhyl010648.1
Basic Information
- Insect
- Dynastes hyllus
- Gene Symbol
- -
- Assembly
- GCA_029619255.2
- Location
- JAROYC020000003.1:1118017-1119777[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.8 1.9e+04 -2.7 0.1 38 44 193 199 181 214 0.56 2 12 0.021 67 5.1 0.0 21 47 232 258 226 263 0.81 3 12 0.089 2.9e+02 3.1 0.1 21 44 260 283 258 291 0.78 4 12 0.18 5.7e+02 2.1 0.0 21 44 288 311 281 317 0.82 5 12 0.027 89 4.7 0.1 22 49 317 344 312 347 0.85 6 12 0.0025 8.2 8.0 0.0 21 47 344 370 342 377 0.86 7 12 0.14 4.6e+02 2.4 0.1 21 36 372 387 368 396 0.77 8 12 0.016 51 5.5 0.0 21 46 400 425 394 431 0.85 9 12 0.019 62 5.2 0.2 21 47 428 454 424 463 0.71 10 12 0.015 48 5.6 0.0 21 46 484 509 481 516 0.85 11 12 0.059 1.9e+02 3.6 0.0 21 46 512 537 508 543 0.84 12 12 0.035 1.1e+02 4.4 0.3 21 44 540 563 536 575 0.78
Sequence Information
- Coding Sequence
- ATGGCTACAGAATACGATAAGTTGCATGAACACTCCATTCATAACTTTGAAGAATACAGCAGTGACGCAGATATCAAATTAGGAAATTCTATAGTTCAAACggaagattttcttgattcaaaaacaggaatatctttgataagtGACGCCAACGTAGCACAAAGTGTCTTactggaaaatattaaagtcgAAAATTTAGACGAGCAGTTGAGCAAAGATATTGGTGGTGCTGAGAActgtgaaaaatataatagtgaCGCAGACATTAAATCAGAAGATTTTATAGTTCAAACGGGAGATTCtcttgattcaaaagcaggaatatctttgataagcgACGATGtcttattggaaaatgttaaagttgaaaatttgaacGGCCAAAGCGATAAGAACTTTAAACACAAACATGAACTAACAGATCACGCCTGTCATAAGCTCGATAAGACTGGTGTTTGTGCGCAATGTGGAGAATCGTTCGAAGGGAAAAACAAACTATACCAACATTTTAGGAACGTACATTTTACCAGGAAGATTTACTCATGTAGTTATTGTGGCTGGGCATATCGTCGTAAGATTGATCTGATGAGACATGTTAGaaaacacaccggtgaaaagctaTTTACTTGCGAGGTTTGTAAGAAGTCGTTTTCTAAGAAGAGTGGATTGATGATTCATACTAAAAAACATACCGgtgaaaaaccttttacttgcggaatttgtaaaaaatcattttcttggaatatTGGACTGAGGATTCATATGAAAATACACACTGGTGAGaagccttttacttgtgaaATTTGTAAAGAATCATTTTGTTGGATGAAAGAACTTATCAAACATATTAAGACACACCCGGGTGAAAAGCCATTCACTTGCGAAGTTTgtcaaaaatcattttcttggataAGCTCACTGAGGACTCATACAAAAATACACACTGGTAAAAGGCCTTATACTTGCAAGatatgtaaaaagtcattttctgaGAAATGTACGTTAAGGACTCACATTAAaatacacaccggtgaaaagccttttacttgcgaggtttgtaaaaactcattttctcagAAGAGCGGACTGAGAAGTCATATGAaaacacacaccggtgaaaagccttttacttgcgagatttgtgAAAGGTCGTTTTCCCAGAAGGGTGGACTAATGATTCATACCAGAACccacactggtgaaaagccgTTTACTTgcgaattttgtaaaaaatcattttcccaGAAGAGTGGACTGATAAGGcatattaaaacacacaccggcgaaaaaccttttacttgtgaagtttgtaaaaagtcgttTTATGCGAGGCATCGTCTGAATAGACATATGAAAACAcataccggtgaaaagccttttgcTTGCGAATTTTGTACGAAATCATTTAGCTGGAAGAGTAGTCTGATAGGTCATATTGGAACGCATACCGGTGAAatgccttttacttgcgagatttgtaaaaaatcattttctgacAAGCAAGGACTGAGGACTCACATTAAAAAACACACCGgcgaaaagccttttacttgcgaattttgcaaaaaatcattttggtCGAGGAAAGGACTGAGAAATCATATTAAAACGcataccggtgaaaagccttttacttgcgagatttgtaaaaagtcgtttTGTGTGAGAGATCGACTGAATAGGCATATTAAAACACACGCTGATGAAAGGCGTCTTACTGCGAACTTAGAAAAAAGTCATTTGGCTGCCCCTCAGGactaa
- Protein Sequence
- MATEYDKLHEHSIHNFEEYSSDADIKLGNSIVQTEDFLDSKTGISLISDANVAQSVLLENIKVENLDEQLSKDIGGAENCEKYNSDADIKSEDFIVQTGDSLDSKAGISLISDDVLLENVKVENLNGQSDKNFKHKHELTDHACHKLDKTGVCAQCGESFEGKNKLYQHFRNVHFTRKIYSCSYCGWAYRRKIDLMRHVRKHTGEKLFTCEVCKKSFSKKSGLMIHTKKHTGEKPFTCGICKKSFSWNIGLRIHMKIHTGEKPFTCEICKESFCWMKELIKHIKTHPGEKPFTCEVCQKSFSWISSLRTHTKIHTGKRPYTCKICKKSFSEKCTLRTHIKIHTGEKPFTCEVCKNSFSQKSGLRSHMKTHTGEKPFTCEICERSFSQKGGLMIHTRTHTGEKPFTCEFCKKSFSQKSGLIRHIKTHTGEKPFTCEVCKKSFYARHRLNRHMKTHTGEKPFACEFCTKSFSWKSSLIGHIGTHTGEMPFTCEICKKSFSDKQGLRTHIKKHTGEKPFTCEFCKKSFWSRKGLRNHIKTHTGEKPFTCEICKKSFCVRDRLNRHIKTHADERRLTANLEKSHLAAPQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626375;
- 90% Identity
- iTF_00626375;
- 80% Identity
- iTF_00626375;