Dhyl010719.2
Basic Information
- Insect
- Dynastes hyllus
- Gene Symbol
- -
- Assembly
- GCA_029619255.2
- Location
- JAROYC020000003.1:1691098-1692900[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.013 42 5.7 0.1 21 47 205 231 197 237 0.84 2 13 0.22 7.2e+02 1.8 0.0 21 44 233 256 229 260 0.87 3 13 0.019 61 5.2 0.0 21 44 261 284 257 288 0.89 4 13 0.037 1.2e+02 4.3 0.0 21 46 289 314 286 320 0.80 5 13 0.24 7.8e+02 1.7 0.3 22 32 318 328 315 343 0.76 6 13 0.0057 18 6.9 0.0 17 46 340 370 335 379 0.79 7 13 0.14 4.6e+02 2.4 0.1 21 32 401 412 396 428 0.77 8 13 0.00036 1.2 10.7 0.0 21 46 429 454 419 460 0.86 9 13 0.14 4.5e+02 2.4 0.0 21 44 457 480 453 484 0.82 10 13 0.057 1.8e+02 3.7 0.1 21 44 485 508 481 512 0.80 11 13 0.012 40 5.8 0.0 21 45 513 537 509 540 0.89 12 13 0.0086 28 6.3 0.0 21 46 541 566 539 568 0.91 13 13 0.33 1.1e+03 1.2 0.1 23 45 571 593 568 597 0.88
Sequence Information
- Coding Sequence
- ATGGCGACAGAATATGATGAGTTGCATGAACATTACGATAACTGTGTGGAATATAATAGTAACCTAGACGTTAAATTAAACGATTTTGTAATTGAAACgggagattttcttgattcaaaagcaggaatatcttTCTTAAGGGACGACATCTTAGCACAAGGTgtcttattgaaaaatattaaagttgaaaatttgaacGAGCAGTTAAGCAAAGATATTGGTAGTACTGAGAActgtgaaaaatataatagtgaCATTCAATTAGAAGATTTTACAGTTCATACaggagattttcttgattcaaaagcaggaatatctttgataagcgACGACATTGTAGCACAAGGTgtcttagaaaatattaaaactgaaaattttaacgacCAATGCGATAAAAGTTTTAAACACGAACATAAACTAGAAGCTGACACGGTCTCTCGTAAGCTCGACAAGAATGTTTTTTGTCCTCAATGTGGAAAATCGTTCGAGAAGAAGAAACTATATCAACATATTAGGAGCGTGCATTGGCTCAGGAAGATTCACATGTGTAGATATTGCGGGCGGACGTTTCGTCACAAATGCAATCTGACCGTACATACTAGaacacacactggtgaaaagccctttgcttgcgagatttgtaaaaagtcgtttTGTGCGCAGGATGCACTGAAGAGACATCTTAGAACgcacactggtgaaaagcctttcACTTGTGAAacttgtaaaaagtcattttctgaCAAGGTTAATCTGACGACTCATATGAAaacacacactggtgaaaagccttttacttgcgagatttgtaaaagGTCATTTTGTGAGAATGGTGGACTGAAGAGACATATTATAACACACACCgatgaaaagccttttacttgcgacatttgtaaaaagtcattttctcgGATGAGTGGACTAAAAACTCATATTAAAGTTCACatcggtgaaaagccttttacttgcgagatctgtaaaaagtcatttagtGAAAGGTGCGGACTGAAGACACATAGTAGaatacacaccggtgaaaagccttttacatgcgaaatttgtaaaaagtcattttctcaGATTGCTGGACTAAAAGTTCATATTAAATTTCACACTGGTGAAAAGCATTTTACatgcgaagtttgtaaaaagtcatttttttcgAAGGCTAGATTGACAAGTCACATGATAAAACATACTGGTGAGAAGCCTTTTACCTGTGAGATCtgcaaaaaatcatttagtGAGAAATGTGGACTGACGGCTCATATGAGAACAcataccggtgaaaagccttttacttgcgaaatttgtaaaaaatcattttctcagAAGCGTGGACTAAAAGCTCATATTAGATATCACACCGGTGAAAAACCGCTTACATGCgaggtttgtaaaaagtcatttttttcaAAGAGTGGACTGAGAAGTCATATGATaaaacacaccggtgaaaagccttttacttgcgagatctgtaaaaaatcatttagtgAGAACTGTGGACTGAAGACACATATTAGaatacacaccggtgaaaagccgtttacttgcgaaatttgtaaaaagtcattttctcaGAGGAGCGGACTAAAAGCTCATATTAAATATCACACCGgcgaaaagccttttacttgtgaagtttgtaaaaaatcatttggcTTCTCTGTAAGGCTGAGAAAACACATGGCGATGCATATGGGGGATTGCCCTTATTCTTGTGAGTTGTGTCCGGCTAAATTTACGAGTTTATTAAATCTAACACGCCATATGAAGCAGCATATCAAAGAAGAAGTCTAA
- Protein Sequence
- MATEYDELHEHYDNCVEYNSNLDVKLNDFVIETGDFLDSKAGISFLRDDILAQGVLLKNIKVENLNEQLSKDIGSTENCEKYNSDIQLEDFTVHTGDFLDSKAGISLISDDIVAQGVLENIKTENFNDQCDKSFKHEHKLEADTVSRKLDKNVFCPQCGKSFEKKKLYQHIRSVHWLRKIHMCRYCGRTFRHKCNLTVHTRTHTGEKPFACEICKKSFCAQDALKRHLRTHTGEKPFTCETCKKSFSDKVNLTTHMKTHTGEKPFTCEICKRSFCENGGLKRHIITHTDEKPFTCDICKKSFSRMSGLKTHIKVHIGEKPFTCEICKKSFSERCGLKTHSRIHTGEKPFTCEICKKSFSQIAGLKVHIKFHTGEKHFTCEVCKKSFFSKARLTSHMIKHTGEKPFTCEICKKSFSEKCGLTAHMRTHTGEKPFTCEICKKSFSQKRGLKAHIRYHTGEKPLTCEVCKKSFFSKSGLRSHMIKHTGEKPFTCEICKKSFSENCGLKTHIRIHTGEKPFTCEICKKSFSQRSGLKAHIKYHTGEKPFTCEVCKKSFGFSVRLRKHMAMHMGDCPYSCELCPAKFTSLLNLTRHMKQHIKEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626365;
- 90% Identity
- iTF_00626365;
- 80% Identity
- iTF_00626365;