Basic Information

Transcription Factor Domain

TF Family: PC4
Domain: PC4 domain
PFAM: PF02229
TF Group: Unclassified Structure
Description: This domain is found at the C-terminal end of Activated RNA polymerase II transcriptional coactivator p15 from humans, YdbC from Lactococcus lactis, and other PC4 family members. p15 has a bipartite structure composed of an N-terminal regulatory domain and a carboxy-terminal cryptic DNA-binding domain [1-4]. Activity is controlled by protein kinases that target the regulatory domain.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.0024 58 4.7 0.0 21 45 26 50 8 53 0.83

2 3 0.00018 4.3 8.3 0.0 13 43 100 130 92 134 0.91

3 3 0.00047 11 7.0 0.0 12 41 263 292 254 297 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.0024	58	4.7	21	45	26	50	8	53	0.83
2	3	0.00018	4.3	8.3	13	43	100	130	92	134	0.91
3	3	0.00047	11	7.0	12	41	263	292	254	297	0.90

Coding Sequence: ATGGTTACAGAATATAATGAGCTGCACGAACATTACAACAATAACTTTGAAGAACATAATAGTGACgcaaacattaaattagaagattttatagttcaaacgggagattttcttgattcaaaagcaggCATATCATTGATAAGCGACAACATCGCAGCGCCAGGTGTCTTTTTGGAagatattaaagttgaaaatatggATGAGCAGTTAAGCAAAGATACTGTTAAAACGGAAGATTCTACTGATTCAAAAGCAAgaatatctttgataagcgACTACGATGTAACACAAGgtgaagaatttaataatgaTCCAGaagttaaattagaagattttgtaattcaaacgggagattttcttgattcaaaagcaggaatatcgTTGATTAGCGACAACATCACAGTGCAAGGTCTCTTTTTGGAagatattaaagttgaaaatatggATGAGCAGTTAAGCAAAGATACTGGTGGTTCCGAGAACTTTAAAACGGAAGATTCTGTTGATTCAAAAGCTCGAATATCGTTGAAAAGTGACCACAATGTAACACAAGgtgaagaatttaataatgatctagacattaaattagatTTTGTAATTCAAACGGGAGATTCTATTGATGCAAAAGCAAGAATACCGTTGATAAGCGACCACAATGTAACACAAGGTGAAGAATTTAGTAATGATCCAGAcgttaaattagaagattttgtaattcaaacagCAGATTCTATTGATGCAAAAGCAAGAATATCGTTGATAAGCGACCACAATGTAACACAAAgtgaagaatttaataataatccaGATGTTAAGTTAGAAgattttgtaattcaaacagGAGATTCTattgattcaaaagcaggaatatctttgataagtGACGCTACTGTAGTTCAAGGTGACTTATTGGAAGATGTTGAAGCTGAAAATCTGAACAACCAAGGCAATGAAAACTTTAAACACAAACATGAACGAAGAGAGGATAGCGTCTGTCATAAGCTGGACGATATTGTAGTTTGTGTGCAATGTGGAAAATCATTTGAAGGCAAGAATAAACTAGATCAACATTTTAGGAGA
Protein Sequence: MVTEYNELHEHYNNNFEEHNSDANIKLEDFIVQTGDFLDSKAGISLISDNIAAPGVFLEDIKVENMDEQLSKDTVKTEDSTDSKARISLISDYDVTQGEEFNNDPEVKLEDFVIQTGDFLDSKAGISLISDNITVQGLFLEDIKVENMDEQLSKDTGGSENFKTEDSVDSKARISLKSDHNVTQGEEFNNDLDIKLDFVIQTGDSIDAKARIPLISDHNVTQGEEFSNDPDVKLEDFVIQTADSIDAKARISLISDHNVTQSEEFNNNPDVKLEDFVIQTGDSIDSKAGISLISDATVVQGDLLEDVEAENLNNQGNENFKHKHERREDSVCHKLDDIVVCVQCGKSFEGKNKLDQHFRR

Sequence clustering based on sequence similarity using MMseqs2